Varroa destructor is an external parasite of Apis mellifera and feeds on the haemolymph of pupae and adult bees, vectoring numerous viral pathogens, in particular the deformed wing virus (DWV). However, the changes in haemolymph protein composition after Varroa infestation are unknown. The objective of this study was to investigate alterations in the haemolymph proteome in relation to Varroa parasitism. Using two-dimensional difference gel electrophoresis and MALDI-TOF/TOF mass spectrometry, we identified changes in 44 haemolymph proteins in response to the parasite and one in protein originated from DWV. The following pathways were affected by Varroa infestation, including carbohydrate metabolism, detoxification and oxidative stress response, nutrient reservoir activity, oxidoreductase activity and the olfactory system. Several physiological functions of honey bees, such as energy metabolism, detoxification, metamorphosis and chemosensing, may be disrupted by Varroa .