Human Metapneumovirus (HMPV) is a paramyxovirus that is a common cause of bronchiolitis and pneumonia in children, elderly and immunocompromised patients. HMPV is responsible for 5% -10% of children hospitalized for acute respiratory tract infections (RTIs). Molecular detection and genotyping of HMPV from patients with RTIs in Diyala province and exploring its association with the clinical picture. This cross-sectional study was conducted in the Diyala province, throughout two seasons; from January to May and from November to December/2018. A total of 323 patients suspected of having RTIs of different ages were enrolled. Data of participants including socio-demographic and clinical observations were collected by using a questionnaire specially designed for this purpose. Three types of respiratory samples were collected including throat, nasal and nasopharyngeal swabs. Real-Time PCR assay was used for molecular detection of HMPV, and two other sets of PCR primers for Attachment (G) and Fusion (F) Human Metapneumovirus genes have been used in the conventional PCR amplification in order to get PCR products used in the sequencing method for genotyping of the virus and phylogenetic tree analysis. Human privacy was respected by obtaining verbal consent. Statistical analysis of data was carried out using the statistical package (SPSS-version 25). Statistical significance was considered if the P-value was equal or less than 0.05. Molecularly, the results revealed that out of 323 specimens, 30 (9.3%) specimens were positive for HMPV, with significantly higher in season II versus season I (93.3% vs 6.7%, P= 0.0001), particularly during November (50%, P= 0.0001). Furthermore, a significantly highest HMPV positivity rate was detected among nasal sinus swabs (96.7%, P= 0.0001). Additionally, the positivity rate was insignificantly higher in up to 5 years old children (P= 0.060). Clinically, cough (73.3%) and Bronchiolitis/bronchitis (86.7%) were significantly associated with HMPV positivity rate (P= 0.006 and P= 0.001) respectively. Genotypically, 15 hMPV positive samples were showed good (G) gene sequences that were submitted to NCBI, and all the Iraqi strains were appeared to be clustered within the sub-lineage B2 only. In conclusion, human Metapneumovirus was the mostly detected respiratory viral pathogen among less than 5 years of Iraqi children complaining of respiratory tract infection with phylogenetically predominance of sub-lineage B2. The seasonal variation of HMPV can be observed in this study. Emerging HMPV strains are continually evolving.