In order to obtain the position of thunderstorm cloud in real time and make it possible to track the thunderstorm cloud motion, a method is proposed for tracking the moving path of thunderstorm cloud, with the aid of the three-dimensional atmospheric electric field apparatus (AEFA). According to the method of images, we establish a spatial model for tracking the moving path. Based on the model, we define the dynamic parameters of thunderstorm cloud position. Subsequently, to realize the moving path tracking of thunderstorm cloud, its coordinates are associated with the time points. Besides, we use the relationship between electric field component measurement error, horizontal angle, elevation angle, and the tracking accuracy to analyze the tracking performance. Finally, a fusion system combining an electric field measurement unit, electric field calibration unit, and permittivity measurement unit is designed to meet the actual needs. The results show that the method can accurately track the thunderstorm cloud moving path and has a better effect. In addition, the method can also be combined with a radar map, thus better predicting the development of the thunderstorm cloud.