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Creative Commons LicensingOSA is aware that some authors, as a condition of their funding, must publish their work under a Creative Commons license. We therefore offer a CC BY license for authors who indicate that their work is funded by agencies that we have confirmed have this requirement. Authors must enter their funder(s) during the manuscript submission process. At that point, if appropriate, the CC BY license option will be available to select for an additional fee.Any subsequent reuse or distribution of content licensed under CC BY must maintain attribution to the author(s) and the published article's title, journal citation, and DOI. Abstract: Microstructured optical fibers, particularly those with a suspended-core geometry, have frequently been argued as efficient evanescent-field fluorescence-based sensors. However, to date there has not been a systematic comparison between such fibers and the more common geometry of a multi-mode fiber tip sensor. In this paper we make a direct comparison between these two fiber sensor geometries both theoretically and experimentally.Our results confirm that suspended-core fibers provide a significant advantage in terms of total collected fluorescence signal compared to multi-mode fibers using an equivalent experimental configuration. Noordegraaf, K. Nielsen, A. Carlsen, and A. Bjarklev, "Photonic crystal fiber based evanescent-wave sensor for detection of biomolecules in aqueous solutions," Opt. Lett. 29(17), 1974-1976 (2004). 12. E. Coscelli, M. Sozzi, F. Poli, D. Passaro, A. Cucinotta, S. Selleri, R. Corradini, and R. Marchelli, "Toward a highly specific DNA biosensor: Pna-modified suspended-core photonic crystal fibers," IEEE J. Sel. Top. Quantum Electron. 16(4), 967-972 (2010). 13. S. C. Warren-Smith, G. Nie, E. P. Schartner, L. A. Salamonsen, and T. M. Monro, "Enzyme activity assays within microstructured optical fibers enabled by automated alignment," Biomed. Opt. Express 3(12), 3304-3313 (2012). Opt. Quantum Electron. 26(3), S261-S272 (1994). 17. C. Bariain, I. R. Matías, F. J. Arregui, and M. Lopez-Amo, "Optical fiber humidity sensor based on a tapered fiber coated with agarose gel," Sensor. Actuat. Biol. Chem. 69, 127-131 (2000). 18. L. C. Shriver-Lake, K. A. Breslin, P. T. Charles, D. W. Conrad, J. P. Golden, and F. S. Ligler, "Detection of tnt in water using an evanescent wave fiber-optic biosensor," Anal. Chem. 67(14), 2431-2435 (1995)