Using computational modeling, we investigate mechanisms of signal transduction. We focus on the spindle assembly checkpoint, where a single unattached kinetochore is able to signal to prevent cell cycle progression. The inhibitory signal switches off rapidly once spindle microtubules have attached to all kinetochores. This requirement tightly constrains the possible mechanisms. Here we investigate two possible mechanisms for spindle checkpoint operation in metazoan cells, both supported by recent experiments. The first involves the free diffusion and sequestration of cell cycle regulators. This mechanism is severely constrained both by experimental fluorescence recovery data and by the large volumes involved in open mitosis in metazoan cells. By using a simple mathematical analysis and computer simulation, we find that this mechanism can generate the inhibition found in experiment but likely requires a two-stage signal amplification cascade. The second mechanism involves spatial gradients of a short-lived inhibitory signal that propagates first by diffusion but then primarily by active transport along spindle microtubules. We propose that both mechanisms may be operative in the metazoan spindle assembly checkpoint, with either able to trigger anaphase onset even without support from the other pathway.kinetochore ͉ mathematical modeling ͉ signal transduction ͉ concentration gradients T he question of how a signal emanating from a small, compact structure in a cell can be amplified and propagated to an entire cell is fundamental to cell biology (1). An excellent example is provided by the spindle assembly checkpoint (SAC) (2), which regulates cell cycle progression from metaphase to anaphase during mitosis. The segregation of sister chromatids that occurs during anaphase is permitted only after all of the kinetochores are attached by microtubules to the mitotic spindle. Even a single unattached kinetochore can signal to the rest of the cell and prevent cell cycle progression (3, 4). A fundamental issue is how a relatively small structure, such as a kinetochore, can generate sufficient signal to robustly communicate with distant subcellular locations (1). Moreover, this signal must switch off rapidly, within a period of minutes, after complete kinetochore attachment to spindle microtubules (4). These requirements strongly constrain the possible signal transduction mechanisms. In this paper, we focus particularly on the SAC in cases where the nuclear envelope breaks down before SAC activity (open mitosis), as in metazoan cells. In this context, we examine two distinct models: a diffusive sequestration model and a model involving active signal transport along spindle microtubules. We believe that both of these pathways may be in simultaneous operation in the metazoan SAC.The metaphase͞anaphase transition is triggered by an intricate sequence of events centered around the proteins securin, cyclin B, and separase. The first step is the ubiquitination of securin and cyclin B by the anaphase-promoting complex͞cyclosome (...