Community-level physiological profiling based upon fluorometric detection of oxygen consumption was performed on hydroponic rhizosphere and salt marsh litter samples by using substrate levels as low as 50 ppm with incubation times between 5 and 24 h. The rate and extent of response were increased in samples acclimated to specific substrates and were reduced by limiting nitrogen availability in the wells.Characterization and classification of heterotrophic microbial communities based on rapid assessment of multiple solecarbon-source use, termed community-level physiological profiling (CLPP) by Lehman et al. (9), were developed over 10 years ago (6). Although CLPP is a valuable method for assessing relative change in microbial communities when properly applied (3, 12), limitations due to selective enrichment resulting from the high substrate concentrations (i.e., Ͼ100 mM) and long incubation periods (typically 1 to 4 days) restrict its present use for assessing actual differences in the physiological capabilities of microbial communities (2,8,14,16). Development of more functionally relevant CLPP will depend on the application of new detection methods that allow for rapid and direct (e.g., O 2 consumption or CO 2 production) rather than indirect (e.g., tetrazolium dye reduction) assessment of respiration, with decreased requisite incubation times and substrate concentrations. In addition, the use of undefined, proprietary reagents should be minimized so that incubation conditions can be defined and manipulated by the investigator.14 C respirometric approaches limit enrichment effects by allowing for detection of physiological response with addition of very low substrate concentrations (i.e., nanomolar levels), but even simplified assay systems (13) still have the expense associated with disposal of radioactive wastes. CLPP approaches based on CO 2 monitoring that limit incubation time have been developed (1) but require high substrate concentrations (i.e., 10 to 100 mM).Tracking the rate of O 2 consumption in the test medium may improve sensitivity, given the relatively low concentration and solubility of O 2 in water. A recently developed, fluorescencebased microplate platform for assessing dissolved oxygen (BD Oxygen Biosensor System; BD Biosciences, Bedford, Mass.) (17) could enable rapid testing of multiple substrates; the effectiveness of this system to detect known shifts in substrate utilization by mixed microbial communities is the subject of this work. The BD Oxygen Biosensor System is based on an O 2 -sensitive fluorophore, 4,7-diphenyl-1,10-phenathroline ruthenium (II) chloride, absorbed into a silicone matrix that is permeable to O 2 (17). The fluorescence of the ruthenium dye is quenched by the presence of O 2 , so the signal from the fluorophore-gel complex loaded on the bottom of the microplate wells increases in response to respiration in the overlying sample. In this work, samples of environmental systems suspended in sterile phosphate-buffered mineral salts (PBMS) ( Ϫ1 ) were inoculated into the ...