Cholesterol ester transfer protein (CETP) moves triglyceride (TG) and cholesteryl ester (CE) between lipoproteins. CETP has no apparent preference for high (HDL) or low (LDL) density lipoprotein as lipid donor to very low density lipoprotein (VLDL), and the preference for HDL observed in plasma is due to suppression of LDL transfers by lipid transfer inhibitor protein (LTIP).Given the heterogeneity of HDL, and a demonstrated ability of HDL subfractions to bind LTIP, we examined whether LTIP might also control CETP-facilitated lipid flux among HDL subfractions. CETP-mediated CE transfers from [ 3 H]CE VLDL to various lipoproteins, combined on an equal phospholipid basis, ranged 2-fold and followed the order: HDL 3 > LDL > HDL 2 . LTIP inhibited VLDL to HDL 2 transfer at one-half the rate of VLDL to LDL. In contrast, VLDL to HDL 3 transfer was stimulated, resulting in a CETP preference for HDL 3 that was 3-fold greater than that for LDL or HDL 2 . Long-term mass transfer experiments confirmed these findings and further established that the previously observed stimulation of CETP activity on HDL by LTIP is due solely to its stimulation of transfer activity on HDL 3 . TG enrichment of HDL 2 , which occurs during the HDL cycle, inhibited CETP activity by ϳ2-fold and LTIP activity was blocked almost completely. This suggests that LTIP keeps lipid transfer activity on HDL 2 low and constant regardless of its TG enrichment status. Overall, these results show that LTIP tailors CETP-mediated remodeling of HDL 3 and HDL 2 particles in subclass-specific ways, strongly implicating LTIP as a regulator of HDL metabolism.Cholesteryl ester transfer protein (CETP) 1 promotes the net transfer of lipids among lipoproteins (1, 2). Because of its unique capacity to mediate net exchange of triglyceride (TG) and cholesteryl ester (CE) between TG-rich VLDL and CE-rich lipoproteins, such as LDL and HDL, CETP plays an essential role in regulating plasma cholesterol levels. By altering lipoprotein core lipid composition, CETP participates in the catabolism of VLDL to LDL (1, 3, 4) and affects the level of LDL subfractions (5-7). Additionally, CETP facilitates HDL metabolism by promoting the formation of larger TG-rich HDL 2 from smaller HDL 3 subspecies (8, 9), stimulating LCAT activity (10, 11), and enhancing the formation of pre-HDL (12). These processes influence the reverse transport of peripheral tissue cholesterol to the liver (2,13,14).In a previous study (15), we demonstrated that CETP possesses no functional preference for HDL over LDL. Consequently, in the absence of other factors, LDL is the most active donor of CE to VLDL due to the relative abundance of CE in this lipoprotein in normal plasma. However, CETP activity is controlled by several apolipoproteins including lipid transfer inhibitor protein (LTIP) (15-19). LTIP has been purified and characterized as an acidic glycoprotein with a molecular mass of 33 kDa (17,20). Molecular cloning of LTIP had determined its identity with apolipoprotein F (20). LTIP prevents CETP activi...