The molecular transform index (FT,,,) is a unitary representation of a molecule based on a Fourier operation on the bond distance or graphical descriptor matrices of the structure while incorporating the atomic number of the constituent atoms. In a series consisting of phosphonates, phosphonothionates, and a phosphinate, the FT, gave an excellent linear correlation (R = 0.9 1 ) with experimentally determined octanol/water partition coefficients (log Po,,). In a second group containing phosphonofluoridates, thionophosphonofluoridates, and phosphoramidofluoridates, the FT, correlation with log Po,,, calculated by the ?r-fragment method, served to separate the fluoridates and amidates as structural subclasses.