The structure and thermophysical properties of polymer nanocomposite systems based on polyethylene glycol and organomodified montmorillonite were studied using the methods of X-ray structural analysis and differential scanning calorimetry. From the data of X-ray structural analysis, it was found that the optimal degree of delamination of montmorillonite, which corresponds to the maximum interlayer distance, occurs in 3-5 minutes. A further increase in the mixing time has no significant effect on the structural characteristics of the nanocomposite. On the basis of calorimetric studies, it is shown that the melting and glass transition temperatures, as well as the degree of crystallinity, reach critical values at 3 min of treatment, after which they remain unchanged. It was established that the time of extruder mixing is optimal. At the same time, the maximum intercalation takes place, which leads to an impact on the final functional characteristics of the polymer-organoclay system. It was established that extruder mixing during 3 min is optimal.