The human endogenous intestinal microbiota is an essential "organ" in providing nourishment, regulating epithelial development, and instructing innate immunity. Even though lots of scientists have evaluated the content of gut microbiota from various points of view, we examined the content of intestinal microbes in the group of healthy middle aged volunteers (40-60) form Slovakia. We have compared faecal cultivable microbiota of vegetarians and omnivores. We have found that the composition of the human microbiota is fairly stable, and it seems that the major microbial groups on species level that dominate the human intestine are conserved in all individuals regardless of dietary habits. Beside the microbial content we have examined the faecal samples also for the presence of antimicrobial active compounds, potential mutagens, and faecal sterols.Keywords: intestinal microbiota, dietary habits, antimicrobial active metabolites, potential mutagenic compounds, faecal sterolsThe composition of human intestinal microbiota in the population was fi rst studied by METCHNIKOFF at the beginning of the last century (1903, 1907). Since that time, the composition of intestinal microbiota and its impact on human health became the research subject of several scientifi c groups worldwide. According to the microbial lifestyle, most cultivable intestinal microorganisms are anaerobes or facultative anaerobes (STEPHEN & CUMMINGS, 1980;SEARS, 2005). The compositions of microbiota rely on several factors, such as host diet, colonization history, and immune status. Microbial composition dramatically changes in the course of life (SEGAL & BLASER, 2014). Changes in the colon during aging may be caused by the decreasing resistance of autochthone bacteria to colonization by other bacteria. The number of anaerobic bacteria is increasing with increasing age. The genus Eubacterium is one of the arising species. The resident gut microbiota mediates metabolic effects, such as the syntheses of vitamins like biotin and folate, as well as absorption of ions including magnesium, calcium, and iron, and contributes to the lipid metabolism (O'HARA & SHANAHAN, 2006). Intestinal microbiota has * To whom correspondence should be addressed. Phone: +421259325528; e-mail: petra.olejnikova@gmail.comThis is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium for non-commercial purposes, provided the original author and source are credited.