ABSTRACT:CYP2D6 substrate status is a critical Go/No Go decision criteria in central nervous system (CNS) drug discovery efforts because the polymorphic nature of CYP2D6 can lead to variable patient safety and drug efficacy. In addition, CYP2D6 is disproportionately involved in the metabolism of CNS drugs compared with other drug classes. Therefore, identifying trends in small molecule properties of CNS-penetrant compounds that can help discriminate potential CYP2D6 substrates from nonsubstrates would allow additional prioritization in the synthesis and biological evaluation of new therapeutic candidates. We report here the conversion of the CNS drug minaprine from substrate to nonsubstrate, as well as the conversion of the related CNS drug minozac from nonsubstrate to substrate, through the use of analog synthesis and CYP2D6 enzyme kinetic analyses. No single molecular property strongly correlated with substrate status for this 3-amino-4-methyl-6-phenylpyridazine scaffold, although molecular volume and charge appeared to be indirectly related. A parsed database of CYP2D6 substrates across diverse chemical structures was assembled and analyzed for physical property trends correlating with substrate status. We found that a complex interplay of properties influenced CYP2D6 substrate status and that the particular chemical scaffold affects which properties are most prominent. The results also identified an unexpected issue in CNS drug discovery, in that some property trends correlative with CYP2D6 substrates overlap previously reported properties that correlate with CNS penetrance. These results suggest the need for a careful balance in the design and synthesis of new CNS therapeutic candidates to avoid CYP2D6 substrate status while maintaining CNS penetrance.The avoidance of CYP2D6-mediated drug metabolism represents an early project management criteria in drug development because of its potential for variable patient safety and drug efficacy arising from genetic polymorphisms and its involvement in the metabolism of many existing drugs (Kramer et al., 2007;Leeson and Springthorpe, 2007). An example of an unwanted, variable patient response resulting from CYP2D6 polymorphisms is the response to codeine, which requires CYP2D6 conversion to the active drug morphine. Patients with a "slow metabolizer" phenotype caused by altered CYP2D6 expression or function can experience reduced analgesic effects resulting from diminished morphine production. In contrast, mutations causing a "rapid metabolizer" phenotype increase toxicity risks as excessive levels of morphine can be produced (Kirchheiner et al., 2007). As a result of such variance, there is considerable interest in identifying features that make small molecules favorable CYP2D6 substrates to prioritize early discovery efforts toward compounds with a lower likelihood of CYP2D6 involvement.The prevailing model of favorable CYP2D6 substrates includes the presence of a basic, protonated nitrogen atom 5, 7, or 10 Å from the site of metabolism (de Groot et al., 1997), bu...