Bombyx mori
silk fibroin (SF) is
a biopolymer that can be processed into materials with attractive
properties (e.g., biocompatibility and degradability) for use in a
multitude of technical and medical applications (including textiles,
sutures, drug delivery devices, tissue scaffolds, etc.). Utilizing
the information from experimental and computational SF studies, a
simplified SF model has been produced (alanine–glycine [Ala–Gly]
n
crystal structure), enabling the application
of both molecular dynamic and density functional theory techniques
to offer a unique insight into SF-based materials. The secondary structure
of the computational model has been evaluated using Ramachandran plots
under different environments (e.g., different temperatures and ensembles).
In addition, the mean square displacement of water incorporated into
the SF model was investigated: the diffusion coefficients, activation
energies, most and least favorable positions of water, and trajectory
of water diffusion through the SF model are obtained. With further
computational study and in combination with experimental data, the
behavior/degradation of SF (and similar biomaterials) can be elucidated.
Consequently, greater control of the aforementioned technologies may
be achieved and positively affect their potential applications.