As part of the joint Finnish-Russian research and development project ''Assessment of the ecological state of the transboundary waters'', seasonal and spatial variations in the phytoplankton communities of Lake Pyhäjärvi were studied in order to identify possible long-term changes and to present recent data (since 2002) on phytoplankton biomass and species composition. Some changes in both phytoplankton biomass and species composition, particularly in the littoral zone and northern basins of the lake, were obvious at the end of the 1980s; in particular, the density of blue-greens increased during that period. Biomasses increased five-fold in 1980, decreased after 1990 and have remained low (0.14 mg l -l ) to the present time. The effective water protection measures applied, especially reducing the phosphorus load from municipal wastewaters and airborne pollution, can now be seen to have improved the water quality. Although no significant temporal differences were found in phytoplankton biomass during the intensive biweekly sampling in 2002, considerable spatial variation was seen within the lake. An obvious change in the species composition of phytoplankton and an increase in biomass were seen even in the loaded parts of the lake. Despite the spatial differences in phytoplankton biomass and community structure, the changed species composition in the northern part of the lake indicated a clear recovery from the blue-green and Chrysophyceae dominated high biomass of the 1980s.