The recent expansion of shellfish mariculture could significantly impact the ocean carbon cycle and its associated biogeochemical processes. To understand the source and fate of particulate organic carbon (POC), a summer cruise was conducted from September 8 to 10, 2022, at a mussel farm on Gouqi Island and its adjacent areas located in the East China Sea. Parameters included in situ temperature and salinity, contents of dissolved oxygen (DO), suspended particulate matter (SPM), POC, and chlorophyll a (Chl a), as well as the stable carbon isotopic composition (δ13C) of organic matter in particle and sediment samples, which were analyzed to facilitate a comparative assessment of the areas inside and outside the mussel farm. The POM was much fresher (POC/Chl a < 150) inside the farm with little impact from sediment resuspension (lower SPM content, 11.6 ± 6.6 mg/L), while a significant influence of sediment resuspension was found outside the farm (SPM > 20 mg/L, POC/Chl a > 150). A two end-member mixing model showed that 82.0 ± 6.0% of POC originated from marine algae within the farm, much higher than that outside the farming area (66.1 ± 7.8%). Moreover, elevated DO saturation but relatively low Chl a concentration within the farm suggested continuous algae consumption following potential high productivity. The averaged δ13C values were similar among suspended POC, sinking POC, and sedimentary organic carbon within the farm, implying the fast export and burial of POC. This is likely due to the filter-feeding habits of mussels, who ingest fresh POC and then pack it as fecal pellets that rapidly settle into the sediment. This study sheds light on the distribution and sources of POM inside and outside the mussel farm on Gouqi Island, enhancing our understanding of the marine carbon cycle on shellfish farms and providing insights into the underlying biogeochemical processes.