This study aims to investigate the impact of vegetation restoration on soil humus and aggregate stability within the karst region of Southwest China. This study focused on soils at five vegetation succession stages (abandoned land, grassland, shrub rangeland, shrubland, and secondary forest) in the typical karst region, and the aggregate stability was determined using wet sieving and the Le Bissonnais method. Simultaneously, the Pallo method and separation extraction were used to determine the humus composition, aiming to analyze the distribution of humus content in the soil aggregates and its effect on aggregate stability. The results revealed the following: (1) The mean weight diameter of soil aggregates significantly increased with vegetation restoration stages. Soil water-stable aggregates at each vegetation stage mainly included particles over 2 mm in size. (2) The humic acid and fulvic acid contents consistently increased with vegetation restoration, and the precipitation quotient value of the humification degree showed an increasing trend. At each vegetation restoration stage, the percentage of each humus component was, from highest to lowest, as follows: insoluble HM, fulvic acid, humic acid, clay-bound HM, and iron-bound HM. (3) Through stepwise regression analysis, humic acid content in >2 mm aggregates, fulvic acid and clay-bound HM contents in 1–2 mm aggregates, and insoluble HM content in <0.25 mm aggregates were the dominant factors affecting soil aggregate stability in the karst region. These results aim to provide novel insights for a more in-depth comprehension of the restoration and rehabilitation of vegetation within the karst region of Southwest China, thereby laying a robust foundation for scientific theories and further investigations.