The intestinal immune system has the challenging task of tolerating foreign nutrients and the commensal
28The intestine's main function is to digest and absorb dietary nutrients, with help from the absorptive epithelium and 29 underlying vasculature and lymphatic system, as well as the microbiome 6 . Nutrient selection and absorptive capacity 30 change along the intestine; most dietary nutrients are absorbed in the villi of the upper small intestine (duodenum (D) 31 and jejunum (J)) and to a lesser extent by the lower small intestine (ileum, I), while the dense microbiota in the I and 32 colon (C) mediates further nutrient release. The intestine also houses the largest immune compartment in the body,
33tasked with providing resistance to toxins and invading pathogens while maintaining tolerance to dietary and 34 microbiota antigens, either by local action or lymphatic trafficking to the gut-draining mLNs to mount adaptive
35All rights reserved. No reuse allowed without permission.(which was not peer-reviewed) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.The copyright holder for this preprint . http://dx.doi.org/10.1101/299628 doi: bioRxiv preprint first posted online Apr. 11, 2018; 2 responses 1,7,9 . We sought to understand how compartmentalized lymphatic drainage of the intestine contributes to an 1 organized immune response in this complex environment.
3To address the role of tissue drainage for immune responses triggered along the intestine, we first imaged the gut 4 lymphatic system including the intestine, mesentery and mLNs using 3D imaging of solvent-cleared tissue stained 5 with an antibody against the lymphatic endothelial cell (LEC) surface marker LYVE-1. In the gut its structure 6 followed the proximal to distal intestinal gradient of absorptive capacity 10 , whereby lacteal length decreased along 7 the small intestine ( Fig. 1 a-c). In germ-free (GF) mice, duodenal absorption may compensate for lack of microbiome-8 mediated distal nutrient release
11, and this was reflected in the length of lymphatic lacteals (Fig. 1c). In contrast, the 9 lymphatics of the colon are organized in two distinct layers, lack lacteals and did not appear to differ in GF mice,
10suggesting that its structural organization is independent of the microbiome (Fig. 1c). The cleared-tissue visualization 11 also revealed a seemingly continuous submucosal lymphatic network along the intestine (Fig. 1a- Fig. 1f, g). Similarly, the increased duodenal but decreased ileal 24 absorptive capacity in GF mice was displayed by corresponding retinol retention in gut tissue and mLNs (Extended
25Data Fig. 1h-j). These data suggest that the compartmentalized lymphatic route transmits distinct niches along the 26 intestine to discrete secondary lymphoid organs, potentially contributing to a regionally-organized immune response.
28We asked if gut segment-specific lymphatic drainage influences immune cells in the mLNs, particularly migratory
36All rights reserved. No reuse allowed withou...