Cardiolipin-or protease-activated protein kinase, isolated from rat liver cytosol and originally named liver PAK-1, was found to be the natural form of protein kinase N (PKN) by comparing the sequences of 43 tryptic peptides of the purified liver enzyme and determining the corresponding liver cDNA sequence. These analyses also identified (i) Arg-546 as the major site of proteolytic activation, (ii) the protease resistance of the C-terminal extension beyond the catalytic domain, and (iii) in vivo stoichiometric phosphorylation of Thr-778 in the mature enzyme. Homology modeling of the catalytic domain indicated that phosphothreonine 778 functions as an anchoring site similar to Thr-197 in cAMP-dependent protein kinase, which stabilizes an active site compatible with preferred substrate sequences of PAK-1/PKN. Sigmoidal autophosphorylation kinetics and increased S6-(229 -239) peptide kinase activity following preincubation with ATP suggested phosphorylation-dependent activation of PAK-1/PKN. The onset of activation corresponded with phosphorylation of the regulatory domain site Ser-377 (located within a spectrin homology region), followed by Thr-504 (within a limited protein kinase C homology region), and, to a lesser extent, Thr-64 (in the RhoA-binding region). Several additional sites in the hinge region adjacent to a PEST protein degradation signal were selectively autophosphorylated following cardiolipin activation. Overall, these observations suggest that the regulation of this class of protein kinase involves complex interactions among phosphorylation-, lipid-, and other ligand-dependent activation events.The recent discovery of a phospholipid-activated protein kinase, structurally distinct from the known PKCs, 1 particularly in its regulatory domain, identified a new subclass of serine/ threonine kinase variously named the liver PAK (1-4), PKN (5, 6), and PRK (7, 8) kinases. Naturally occurring enzymes of this type were first identified in the rat liver cytosol fraction (1-4) and, more recently, in various subcellular fractions of rat testis (9). The liver enzyme was detected as a protease-activated kinase activity, hence its original name, liver protease-activated kinase-1 (PAK-1) (1-3). Its apparent M r (116,000) (3) and the matching amino acid sequences of catalytic domain-derived tryptic peptides suggest a close structural relationship with rat lung PKN (3, 5). The liver enzyme's narrow range of substrates and strong preference for basic amino acid residues in the vicinity of the phosphorylation site (1, 2) suggest a highly specialized catalytic activity with properties distinct from, although overlapping, those of the PKCs (2, 3, 14, 15). Other functional properties also distinguish liver PAK-1 from the PKCs, including differential lipid responsiveness and inhibitor sensitivities (2)(3)(4)14). In addition to lipid activation (10, 11), human PKN/PRK1 interacts specifically with, and is activated by, the RhoA GTP-binding protein in vitro and is activated via a RhoA-dependent signal transduction pathway in...