The cysteine proteinase cathepsin B is one member of the lysosomal acid hydrolases. Based on the peptide sequence of rat liver cathepsin B, an oligonudeotide mixture containing 128 different 17-mers was synthesized and used as a probe to screen adult and fetal human liver cDNA libraries. A recombinant clone with a 1540-nucleotide insert was identified from the fetal library, and DNA sequence analysis confirmed that this done encodes human cathepsin B. The clone, designated pCB-1, has sequences for 81% of the coding region (for amino acid residues 50-252) together with w880 nucleotides of the 3' untranslated region of the mRNA. The DNA sequence also shows that the predicted carboxyl terminus of the coding sequence is longer than the mature protein by 6 amino acid residues. Southern blot analysis of restriction enzyme digests of human placental DNA revealed a simple pattern of hybridizing fragments using the cathepsin B coding sequence as probe. The result suggests that there is a single copy of cathepsin B gene per haploid genome.Proteinases are present in all forms of living organisms. The events of general and limited proteolyses have been attributed to actions of these enzymes. In general proteolysis, proteinases digest nutrient proteins and participate in the turnover of cellular proteins, whereas in limited proteolysis, proteinases modify substrate proteins and alter the properties and physiological functions of these proteins. Thus, limited proteolysis can play regulatory roles during cell growth and differentiation (1,2).Based on the amino acid residues at their active sites, proteinases are classified into serine, cysteine, aspartate, and metalloproteinases. Members of the cysteine proteinase family have wide phylogenetic distribution, and examples include papain from the papaya plant and cathepsin B from mammalian tissues. Cathepsin B is a lysosomal enzyme that is functional during intracellular protein catabolism and may also be involved in the proteolytic processing of protein precursors such as proinsulin (3)(4)(5). Cathepsin B has been implicated in several disease states including muscular dystrophy (6), rheumatoid arthritis (7), and tumor metastasis (8-11). We and others have demonstrated that cathepsin B-like proteinases may also be involved during differentiation of the cellular slime mold Dictyostelium discoideum (12, 13).To further investigate the role of cathepsin B in cellular functions, we have selected the molecular genetic approach. Here we report our results on the isolation and characterization of a cDNA clone for human cathepsin B.MATERIALS AND METHODS Synthesis of Oligodeoxyribonucleotides. A mixture of 17-nucleotide-long oligonucleotides encoding a portion of the rat liver cathepsin B protein sequence was synthesized by using a solid-phase phosphotriester method (14, 15). For amino acids specified by more than one codon, all possible nucleotides were inserted at the ambiguous positions. The synthesis was performed with a Vega Model 280 Automated Polynucleotide Synthesizer by a...