Differential gene expression during floral transition in pineapple

Abstract

Pineapple (Ananas comosus var. comosus) and ornamental bromeliads are commercially induced to flower by treatment with ethylene or its analogs. The apex is transformed from a vegetative to a floral meristem and shows morphological changes in 8 to 10 days, with flowers developing 8 to 10 weeks later. During eight sampling stages ranging from 6 h to 8 days after treatment, 7961 genes were found to exhibit differential expression (DE) after the application of ethylene. In the first 3 days after treatment, there was little change in ethylene synthesis or in the early stages of the ethylene response. Subsequently, three ethylene response transcription factors (ERTF) were up‐regulated and the potential gene targets were predicted to be the positive flowering regulator CONSTANS‐like 3 (CO), a WUSCHEL gene, two APETALA1/FRUITFULL (AP1/FUL) genes, an epidermal patterning gene, and a jasmonic acid synthesis gene. We confirm that pineapple has lost the flowering repressor FLOWERING LOCUS C. At the initial stages, the SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1) was not significantly involved in this transition. Another WUSCHEL gene and a PHD homeobox transcription factor, though not apparent direct targets of ERTF, were up‐regulated within a day of treatment, their predicted targets being the up‐regulated CO, auxin response factors, SQUAMOSA, and histone H3 genes with suppression of abscisic acid response genes. The FLOWERING LOCUS T (FT), TERMINAL FLOWER (TFL), AGAMOUS‐like APETELAR (AP2), and SEPETALA (SEP) increased rapidly within 2 to 3 days after ethylene treatment. Two FT genes were up‐regulated at the apex and not at the leaf bases after treatment, suggesting that transport did not occur. These results indicated that the ethylene response in pineapple and possibly most bromeliads act directly to promote the vegetative to flower transition via APETALA1/FRUITFULL (AP1/FUL) and its interaction with SPL, FT, TFL, SEP, and AP2. A model based on AP2/ERTF DE and predicted DE target genes was developed to give focus to future research. The identified candidate genes are potential targets for genetic manipulation to determine their molecular role in flower transition.

Genome-wide transcript expression analysis reveals major chickpea and lentil genes associated with plant branching

“…The negative modulation of brassinosteroid levels resulted in plants with typical brassinosteroid-deficient phenotypes ( Han et al., 2017 ). In contrast, AGL8 (also known as FRUITFULL) is an Agamous-like MADS-box protein accumulated in apical meristems, negatively modulated by APETALA1 (formerly known as AGL7), which acts by regulating the transition between vegetative phase to reproductive phase, cell differentiation during Arabidopsis fruit development, and inflorescence architecture ( Mandel and Yanofsky, 1995 ; Gu et al., 1998 ; Ferrándiz et al., 2000 ; Melzer et al., 2008 ; Paull et al., 2023 ). In turn, APETALA1 regulates the expression of several genes involved in floral development and plant branching ( Winter et al., 2015 ; Goslin et al., 2017 ).…”

Table_2.xlsx

“…The negative modulation of brassinosteroid levels resulted in plants with typical brassinosteroid-deficient phenotypes (Han et al, 2017). In contrast, AGL8 (also known as FRUITFULL) is an Agamous-like MADS-box protein accumulated in apical meristems, negatively modulated by APETALA1 (formerly known as AGL7), which acts by regulating the transition between vegetative phase to reproductive phase, cell differentiation during Arabidopsis fruit development, and inflorescence architecture (Mandel and Yanofsky, 1995;Gu et al, 1998;Ferrańdiz et al, 2000;Melzer et al, 2008;Paull et al, 2023). In turn, APETALA1 regulates the expression of several genes involved in floral development and plant branching (Winter et al, 2015;Goslin et al, 2017).…”

DataSheet_1.docx

“…The negative modulation of brassinosteroid levels resulted in plants with typical brassinosteroid-deficient phenotypes (Han et al, 2017). In contrast, AGL8 (also known as FRUITFULL) is an Agamous-like MADS-box protein accumulated in apical meristems, negatively modulated by APETALA1 (formerly known as AGL7), which acts by regulating the transition between vegetative phase to reproductive phase, cell differentiation during Arabidopsis fruit development, and inflorescence architecture (Mandel and Yanofsky, 1995;Gu et al, 1998;Ferrańdiz et al, 2000;Melzer et al, 2008;Paull et al, 2023). In turn, APETALA1 regulates the expression of several genes involved in floral development and plant branching (Winter et al, 2015;Goslin et al, 2017).…”