Genotypic variation at six of 67 microsatellite loci we developed from R a m ridibundu, containing di-or trinucleotidc simplesequence repeats, confirms the value of microsatellites as an evolutionary genetic tool for studying western Palearctic water frogs, a model system characterized by clonal reproduction in natural hybrid lineages. R. ridihunda, Rana lessonae. and their hemiclonal hybrid Rana esculenta, which transmits only its ridibunda genome to gametes, are highly variable in central Poland and northern Switzerland: with one exception (a locus that is part of a coding region), each locus was polymorphic in each taxon when scorable, and the number of alleles was high (in Swiss Zessonue-esculentu populations, 1-6 per locus, total 13. for ridihundu genomes; 1-9 per locus, total 23, for lessonue genomes; 3 shared by both genomes). Estimated repeat numbers ranged from 3 to 14 for trinucleotide-and from 6 to 27 for dinucleotide-repeats. Nonamplifying (null) alleles, problematic because they underestimate genotypic variability if undetected, occur in ridibunda genomes of Swiss R. esculenra at one locus: apparent lessonue null alleles at another locus were subsequently resolved for several segregating alleles evidenced by bands of much lower intensity. Two loci had multiple ridibunda alleles in Swiss R. escufentu and thus discriminate between hemiclones, with a resolution superior to that of allozymes. Adding these two loci to our protein electrophoretic data (7 loci) more than doublcd the number of hemiclones detected, showed that several allozyme-defined hemiclones are composites of multiple microsatellite hemiclones, and revealed clonal diversity in populations that are uniclonal by allozyme data. The extent to which microsatellite-defined hemiclones result from primary hybridizations or from subsequent mutations in ridibunda genomes of R. esculenra lineages remains to be determined. A sample of newly metamorphosed R. ridibundu from hybrid x hybrid matings collected at a Swiss population in the fall had a significant heterozygote excess at the two loci that varied in ridihunda genomes; this shows that most, probably all, of them originated from inter-rather than intrahemiclonal matings, in accord with the idea that the usual hybrid x hybrid inviability in lessonae-esculenfa systems is caused by deleterious recessive alleles on the clonally inherited ridihunda genomes. Three of four microsatellite loci tested amplified in most species of western Palearctic water frogs.