Chromatin of Chironomus thummi (Diptera) contains seven sequence variants of histone Hi. A structurally divergent Hi, variant I-1, accounts for about 20% of the total Hi in C. th. piger and for about 30% in C. th. thummi.Monoclonal antibodies against this protein have been induced and have revealed its restriction to the centromeres and to a limited number of other bands in the salivary gland chromosomes. Indirect inmunofluorescence of the somatically paired homologous chromosomes of F1 hybrids indicates that the difference between the two subspecies in Hi I-1 content largely depends on differences situated at a number of distinct homologous chromosome bands. These bands were intensely decorated by antibodies against Hi I-1 in C. th. thummi but appeared virtually black in C. th. piger. The same bands, however, were decorated equally in both subspecies by an antibody that reacts with other Hi variants but does not recognize Hi I-1 and by a polyclonal anti-Hi antibody. The results suggest that Hi variant I-1 is characteristic of a specific type of chromatin that is confined to distinct chromosome segments and that is more frequent in the subspecies C. th. thummi, which has a 27% larger genome.reported earlier, larvae of C. thummi contain seven different sequence variants of histone H1 (12-14). Salivary gland nuclei contain several different and possibly all seven H1 variants. Antibodies that recognize either a subset of the H1 complement or one single H1 variant have been induced and have been used in the present study to decorate larval salivary gland chromosomes. We find that a specific H1 variant, I-1, is abundant in a limited number of chromosome bands, while it is rare or virtually absent in the chromatin of other chromosome regions. A comparison of two subspecies, C. th. thummi and C. th. piger, which differ remarkably in their total content of H1 variant I-1, revealed that this difference is largely confined to differences between specific homologous chromosome bands. Many of the C. th. thummi chromosome regions with a high content of H1 I-1 differ from their homologous C. th. piger counterparts also in that they contain more and repetitive DNA (15,16), replicate late in S phase (17), and/or react positively in a C-banding staining procedure (18). It appears that a high percentage of H1 variant I-1 is characteristic of a specific type of chromatin.In the periodic structural element of chromatin, the nucleosome, DNA is associated with octameric protein complexes containing pairs of molecules of each of four types of histones. The folding ofthis chain of nucleosomes into the 30-nm fiber of eukaryote chromatin is mediated by the binding of another type ofhistone, H1 (1). Numerous organisms and cell types have been found to contain several different subtypes of H1 (for reviews, see refs. 2, 3), but the functional role of this heterogeneity is not known.In the course of spermiohistogenesis in mammals (4-6) and erythrocyte maturation (7-9), most of the nuclear H1 molecules are replaced by other members of...