Objective To study the value of whole-tumor histogram analysis which is based on apparent diffusion coefficient maps in grading diagnosis of ependymoma. Methods 71 patients with ependymal tumors were retrospectively analyzed, including 13 cases of WHO grade I, 28 cases of WHO grade II, and 30 cases of WHO grade III. Mazda software was used to draw the region of interest (ROI) in the apparent diffusion coefficient maps of three groups on every layer of tumor level. The whole-tumor gray histogram analysis was carried to obtained nine characteristic parameters, including mean, variance, kurtosis, skewness, Perc.01%, Perc.10%, Perc.50%, Perc.90%, and Perc.99%. When the parameters satisfy the test of normal distribution and homogeneity of variance, single factor analysis of variance (ANOVA) was carried to compare the three groups and LSD t test was performed to compare the two groups. Besides, the ROC curve was used to analyze the diagnostic efficacy of the parameters. Results Variance, Perc.01%, and Perc.10% had significant differences among the three groups (all P < 0.05). The remaining six parameters had no significant difference among the three groups (all P > 0.05). And, between WHO I and WHO II, the sensitivity and specificity of the Perc.10% were 85.7% and 100.0%, the AUC was 0.872, and the cutoff was 126.5. Between WHO I and WHO III, the sensitivity and specificity of the Perc.10% were 85.7% and 87.7%, the AUC was 0.835, and the optimum critical value was 131.33. Besides, the sensitivity, specificity, and AUC of variance between WHO II and WHO III are 68.4%, 76.9%, 0.794, and 2645.7, respectively. They had higher identification efficiency. Conclusion Whole-tumor histogram analysis of apparent diffusion coefficient (ADC) maps could provide ancillary diagnostic value in grading diagnosis of ependymoma. Perc.10% had a high diagnostic efficiency.