The natural sciences are receiving increasing attention in the Global South. This timely development may help mitigate global change and quicken an envisioned food system transformation. Yet in order to resolve complex issues such as agrochemical pollution, science ideally proceeds along suitable trajectories within appropriate institutional contexts. Here, we employ a systematic literature review to map the nature of inquiry and institutional context of pest management science in 65 low- and middle-income countries published from 2010 to 2020. Despite large inter-country variability, any given country generates an average of 5.9 publications per annum (range 0–45.9) and individual nations such as Brazil, Kenya, Benin, Vietnam, and Turkey engage extensively in regional cooperation. International development partners are prominent scientific actors in West Africa but are commonly outpaced by national institutions and foreign academia in other regions. Transnational institutions such as the CGIAR represent a 1.4-fold higher share of studies on host plant resistance but lag in public interest science disciplines such as biological control. Despite high levels of scientific abstraction, research conducted jointly with development partners shows real yet marginal improvements in incorporating the multiple (social–ecological) layers of the farming system. Added emphasis on integrative system-level approaches and agroecological or biodiversity-driven measures can extend the reach of science to unlock transformative change.