Abstract. Transient storage is a measure of the exchange of main channel flow with subsurface hyporheic flow and surface water dead zones. Hyporheic flow, in which river water enters the channel bed and banks to reemerge downstream, promotes biochemical processes that are important for water quality and aquatic habitat. Previous studies have quantified transient storage and hyporheic flow on small streams but were not specifically developed to identify both of these processes over long reaches of large rivers. We studied transient storage on the eighth-order upper Willamette River, which flows through highporosity gravel deposits conducive to hyporheic flow. We used main channel dye tracer studies and solute transport modeling to estimate transient storage on nine study reaches in a 26-km-long study area. We also took dye measurements