This study aims to advance the recycling of mercury-containing waste and promote sustainable development within the polyvinyl chloride (PVC) industry. Our innovative system integrates pre-treatment technology (spraying potassium permanganate and demisting and dust removal) with efficient non-thermal plasma oxidation, resulting in excellent treatment efficiency, low cost, and simple operation. With a processing capacity of 3000 m3/h, the concentration of mercury emissions in flue gas can achieve the target of <0.01 mg/m3, boasting a removal efficiency exceeding 98%, which satisfies the standard “Emission standard of air pollutants for industrial kiln and furnace” (GB 9078-1996). Our results can provide technical support for the comprehensive purification of mercury-containing flue gas during the resource recovery process from mercury-containing waste. The application of our system can contribute to reducing mercury emissions in the PVC industry, lowering occupational exposure risks for workers, and promoting China’s better compliance with “the Minamata Convention on Mercury”.