“…S1) and the contralateral ear was processed for validation by microscopy or extraction of RNA or protein. Insufficient material was obtained from only one ear of the majority of sham-treated animals requiring pooling 1 The abbreviations used are: OM, otitis media; 12S-HHTrE, 12S-hydroxyheptadecatrienoic acid; 13-HDoHE, 13-hydroxydocosahexaenoic acid; 16-HDoHE, 16-hydroxydocosahexaenoic acid; 13-HpODE, 13(S)-hydroperoxyoctadeca-9Z,11E-dienoic acid; 15-HETE, 15-hydroxyeicosatetraenoic acid; 5-HETE, 5-Hydroxyicosatetraenoic acid; 9-HODE, 9-hydroxyoctadecadienoic acid; AI-2, autoinducer 2; AOM-acute otitis media; Arp-actin related protein; AUC-area under the curve; BEGM-bronchial epithelial cell growth medium; BHT-butylated hydroxytoluene; BiNGO, biological network gene ontology; CCR-7, C-C chemokine receptor type 7; CE-collision energy; ChoP, phosphorylcholine; DIA, Data Independent Analysis; DDA, Data Dependent Analysis; DMSO, dimethyl sulfoxide; DIS-defined iron source; DPBS-phosphate buffered saline; FIA, Flow Injection Analysis; FIA-MS/MS, Flow Injection Analysis Tandem Mass Spectrometry; Gln-glutamine; GMFG, glia maturation factor G; GMFG-glia maturation factor G; GO, gene ontology; HRP-horse radish peroxidase; IRF3, Interferon regulatory factor 3; KEGG, Kyoto Encyclopedia of Genes and Genomes; LLOQ, Lower limit of quantification; LOD, Limit of Detection; LPS, lipopolysaccharide; Lys-lysine; MAPK, mitogenactivated protein kinase; MRM-multiple reaction mode; NAD, nicotinamide adenine dinucleotide; NADPH, nicotinamide adenine dinucleotide phosphate (reduced); NF-kB, nuclear factor kappalight-chain-enhancer of activated B cells; NHBE-normal human bronchial epithelial; NTHI-nontypeable Haemophilus influenzae; OME-otitis media with effusion; Orn-ornithine; PAD, peptidyl arginine deiminase; PAF, platelet activating factor; PC, phosphatidylcholine; PC aa, Diacyl phosphatidylcholine; PC ae, Acyl-alkyl phophatidylcholine; PCA-principal components analysis; PLGS ProteinLynx Global Server; QC-quality control; qRT-PCR-quantitative reverse transcription-PCR; TLR4, toll-like receptor 4; UPLCultra performance liquid chromatography. of the two ears from each animal for multiomic analysis.…”