The ability to preserve noncovalent, macromolecular assemblies intact in the gas phase has paved the way for mass spectrometry to characterize ions of increasing size and become a powerful tool in the field of structural biology. Tandem mass spectrometry experiments have the potential to expand the capabilities of this technique through the gas-phase dissociation of macromolecular complexes, but collisions with small gas atoms currently provide very limited fragmentation. One alternative for dissociating large ions is to collide them into a surface, a more massive target. Here, we demonstrate the ability and benefit of fragmenting large protein complexes and inorganic salt clusters by surface-induced dissociation (SID), which provides more extensive fragmentation of these systems and shows promise as an activation method for ions of increasing size. ver the past two to three decades, mass spectrometry (MS) has expanded significantly, from its early use as a technique for measuring the isotopes of elements and analyzing volatile compounds, to a technique that is now routinely used to study nonvolatile molecules and large macromolecular complexes. Increasingly, mass spectrometry and ion mobility/mass spectrometry are described as structural biology tools. Mass spectrometry has recently provided insights on posttranslational modifications [1], mono-and polydisperse subunit stoichiometry [2], subunit organization [3,4], and noncovalent protein-ligand binding sites [5]. In addition to revealing structural information, mass spectrometry can be used to monitor dynamic processes, such as protein complex assembly [6], protein-substrate and protein-protein interactions [7,8], and substratespecific conformational changes [9].One of the limitations of current technology, however, is the fact that commercial instrumentation is still hampered by the amount of dissociation that can be induced from large biomolecular complexes. Often, MS has to be combined with many solution-based experiments (H/D exchange plus digestion, chemical crosslinking plus digestion, limited proteolysis, solution disruption by changes in ionic strength) because the MS instruments commercially available do not provide extensive dissociation of these massive complexes. A typical dissociation result that is achieved is ejection of a monomer subunit as illustrated here (Figure 1) for a small heat shock protein (sHSP) dodecamer, consisting of 12 subunits each weighing 16.9 kDa [8,10,11]. The 16.9 kDa monomer typically carries away a large percentage of the charge of the original complex with the remainder of the charge on the 11-mer that weighs 186 kDa. Investigators have concluded that this behavior, which has been observed by several research groups for many different noncovalent protein complexes, happens because the low-energy collisions with a gas initiate unfolding of one of the protein subunits [12][13][14]. As this subunit unfolds, it gains surface area, thus allowing it to accept more charge. Eventually, when the unfolding protein and the remainde...