Plant protoplasts show physiological perceptions and responses to hormones, metabolites, environmental cues, and pathogen-derived elicitors, similar to cell-autonomous responses in intact tissues and plants. The development of defined protoplast transient expression systems for high-throughput screening and systematic characterization of gene functions has greatly contributed to elucidating plant signal transduction pathways, in combination with genetic, genomic, and transgenic approaches.The availability of mutants, transgenic plants, global gene expression profiles, and genomic sequences has offered invaluable opportunities in understanding organismal plant biology at the cellular and molecular level (Gai et al., 2000; Genome, 2000; Parinov and Sundaresan, 2000;Richmond and Somerville, 2000;Sussman et al., 2000;Walbot, 2000;Zhu and Wang, 2000). Notably, molecular and genetic studies have discovered central components from receptors to transcription factors in diverse plant signal transduction pathways (Bleecker and Kende, 2000; Gray and Estelle, 2000; McCarty and Chory, 2000;Urao et al., 2000; Dangl and Jones, 2001; Inoue et al., 2001;Schroeder et al., 2001; Tena et al., 2001;Zhu, 2001). Still, many missing links exist in the plant transduction pathways from signals to target genes.Analogous to the mammalian tissue culture lines and transient gene expression assays that are indispensable for the rapid progress in discoveries of signal transduction pathways in multicellular organisms, protoplast transient expression systems using parsley (Petroselinum crispum), maize (Zea mays), carrot (Daucus carota), alfalfa (Medicago sativa), Arabidopsis, and tobacco (Nicotiana tabacum) suspension culture cells have been established. These plant cell lines offer new opportunities to dissect signal transduction pathways involved in UV (Lipphardt et al., 1988), abscisic acid (ABA; Vasil et al., 1989), metabolite (Loake et al., 1991), ribosomal RNA (Doelling and Pikaard, 1993), light (Frohnmeyer et al., 1994; Harter et al., 1994), auxin (Liu et al., 1994), defense (Nurnberger et al., 1994), and cell cycle regulation (Evans and Bravo, 1983; Nagata et al., 1992; Ito et al., 2001). Compared with cell culture lines, the use of fresh tissues as protoplast sources offers unique advantages. For example, protoplasts isolated from plant tissues retain their cell identity and differentiated state; they show high transformation efficiency with low maintenance. These freshly isolated protoplasts have proven to be physiological and versatile cell systems for studying a broad spectrum of plant signaling mechanisms underlying phytochrome, clock (Kim et al., 1993), auxin (Abel and Theologis, 1996), gibberellin (GA; Gubler et al., 1999), light, sugar, stress, auxin, hydrogen peroxide (Sheen, 1999; Tena et al., 2001), membrane transport (Maathuis et al., 1997; Bauer et al., 2000; Hamilton et al., 2000;Schroeder et al., 2001), ABA (Uno et al., 2000), cytokinin (Hwang and Sheen, 2001), and cell death (Asai et al., 2000; Bethke and Jone...