The performance of a direct hydrocarbon phosphoric acid fuel cell, PAFC, was investigated using petroleum diesel, biodiesel, and n-hexadecane as the fuels. We believe this is the first study of a fuel cell being operated with petroleum diesel as the fuel at the anode. Degradation in fuel cell performance was observed prior to reaching steady state. The degradation was attributed to a carbonaceous material forming on the surface of the anode. Regardless of the initial degradation, a steady-state operation was achieved with each of the diesel fuels. After treating the anode with water the fuel cell performance recovered. However, the fuel cell performance degraded again prior to obtaining another steady-state operation. There were several observations that were consistent with the suggestion that the carbonaceous material formed from the diesel fuels might be a reaction intermediate necessary for steady-state operation. Finally, the experiments indicated that water in the phosphoric acid electrolyte could be used as the water required for the anodic reaction. The water formed at the cathode could provide the replacement water for the electrolyte, thereby eliminating the need to provide a water feed system for the fuel cell.