has been given to cellular phospholipid analyses compared with protein or peptide analyses. However, recent progress in mass spectrometric analysis has enabled the identifi cation of small cellular components including phospholipids and quantifi cation of their cellular expression profi les ( 3, 4 ).ESI MS is widely used for phospholipid analysis. Currently, MALDI imaging MS (MALDI IMS) has become the prime choice because it provides additional advantages over ESI, including simple sample preparation and an abundance of information about molecular structures and spatial data ( 3,(5)(6)(7)(8)(9). The principal advantage of MALDI IMS is its ability to ionize molecules directly from the surface of tissue samples, which can demonstrate the spatial distribution of molecules of interest. However, MALDI IMS must be further improved to resolve technical problems such as the ambiguity of structural determination, unequal ionization effi ciencies of different compounds, and complications due to uneven tissue structure. Glycerophospholipids can be classifi ed according to their head groups, linkage between the polar chain and glycerol backbone, and variability in their FA composition ( 9 ). Depending on the presence of amine or hydroxyl structures on their head group, phospholipids can be ionized in either positive or negative mode. The ionization effi ciency of lipids can also be affected by their head group structure. Occasionally, it is diffi cult to perform MALDI IMS analysis twice in both positive and negative ionization modes on the same tissue sample to identify lipid composition Abstract Neuronal membrane phospholipids are highly affected by oxidative stress caused by ischemic injury. Thus, it is necessary to identify key lipid components that show changes during ischemia to develop an effective approach to prevent brain damage from ischemic injury. The recent development of MALDI imaging MS (MALDI IMS) makes it possible to identify phospholipids that change between damaged and normal regions directly from tissues. In this study, we conducted IMS on rat brains damaged by ischemic injury and detected various phospholipids that showed unique distributions between normal and damaged areas of the brain. Among them, we confi rmed changes in phospholipids such as lysophosphatidylcholine, phosphatidylcholine, phosphatidylethanolamine, and sphingomyelin by MALDI IMS followed by MS/MS analysis. These lipids were present in high concentrations in the brain and are important for maintenance of cellular structure as well as production of second messengers for cellular signal transduction. Our results emphasize the identifi cation of phospholipid markers for ischemic injury and successfully identifi ed several distinctly located phospholipids in ischemic brain tissue.