Photosystem I (PSI) is a large pigment-protein complex that unites a reaction center (RC) at the core with ∼100 core antenna chlorophylls surrounding it. The RC is composed of two cofactor branches related by a pseudo-C2 symmetry axis. The ultimate electron donor, P 700 (a pair of chlorophylls), and the tertiary acceptor, F X (a Fe 4 S 4 cluster), are both located on this axis, while each of the two branches is made up of a pair of chlorophylls (ec2 and ec3) and a phylloquinone (PhQ). Based on the observed biphasic reduction of F X , it has been suggested that both branches in PSI are competent for electron transfer (ET), but the nature and rate of the initial electron transfer steps have not been established. We report an ultrafast transient absorption study of Chlamydomonas reinhardtii mutants in which specific amino acids donating H-bonds to the 13 1 -keto oxygen of either ec3 A (PsaA-Tyr696) or ec3 B (PsaBTyr676) are converted to Phe, thus breaking the H-bond to a specific ec3 cofactor. We find that the rate of primary charge separation (CS) is lowered in both mutants, providing direct evidence that the primary ET event can be initiated independently in each branch. Furthermore, the data provide further support for the previously published model in which the initial CS event occurs within an ec2/ec3 pair, generating a primary ec2 þ ec3 − radical pair, followed by rapid reduction by P 700 in the second ET step. A unique kinetic modeling approach allows estimation of the individual ET rates within the two cofactor branches.Chlamydomonas | electron transfer directionality | femtosecond absorption | photosystem I | ultrafast spectroscopy I n oxygenic photosynthesis, the primary reactions of light utilization are driven by two multisubunit, pigment-protein complexes-photosystem II (PSII) and photosystem I (PSI) (1-3). The structures of PSI from the cyanobacterium Thermosynechococcus elongatus (4) and from the plant Pisum sativum (5) have been resolved to 2.5 Å and 3.4 Å, respectively. The PSI core complex consists of an extensive antenna (ANT) system of ∼100 densely packed Chls and a relatively isolated group of redox (reduction-oxidation reaction) active cofactors at the center composing the reaction center (RC). As in all other RCs, the cofactors in the RC of PSI form two quasi-symmetric branches (Fig. 1), diverging from a Chl a 0 ∕Chl a pair (ec1 A ∕ec1 B ) traditionally called P 700 (4). In each branch is a pair of Chl a molecules (ec2 A ∕ec3 A or ec2 B ∕ec3 B ) and a phylloquinone (PhQ A or PhQ B ). Finally, the branches join again at the F X iron-sulfur (FeS) cluster.The symmetry of the cofactor branches is key to discussion of the directionality of electron transfer (ET) in PSI. Originally, it had been assumed that, analogous to the type II RCs, ET in PSI proceeded along only one of the cofactor branches, and that the other branch was not used. This idea would have been supported by the structural asymmetry of P 700 , if P 700 were the primary electron donor in PSI. However, evidence was provided that muta...