Transcranial Doppler (TCD) is a widely used, non-invasive, rapid and reproducible monitoring method for observing the condition of middle cerebral artery. Micro embolic signals, which appear in various clinical scenarios such as; carotid stenosis, aortic arch plaques, atrial fibrillation, myocardial infarction, patent foramen ovale and valvular stenosis, can be detected by the analysis of TCD signals. Discrete wavelet transform based methods were frequently used in literature for micro embolic signal detection. However, in all the previously used complex/non-complex discrete wavelet transform based methods, low Q-factor wavelets were employed for feature extraction. Low Q-factor wavelets have been successfully used for processing piecewise smooth signals but for the embolic signals, a discrete wavelet transform with better frequency resolution is needed. Therefore in this study, a novel Directional Dual Tree Rational Dilation Wavelet Transform (DDT-RADWT), in which the Q-factor of the analysis and synthesis filters can be adjusted due to the properties of signal of interest, is used as the feature extractor. DDT-RADWT is applied to a dataset consisting of 130 micro embolic signals and 130 non-embolic signals (65 artifacts and 65 Doppler speckles) and the obtained coefficients are used as features. In the proposed method, in order to utilize from the different frequency characteristics of micro embolic, artifact and Doppler speckle signals, the DDT-RADWT is applied with high Q-factor filters. The extracted coefficients are given to k-NN and SVM classifiers with the aim of discriminating two classes of micro embolic signals and non-embolic signals. The results show that higher general accuracy and micro embolic signal detection accuracies are obtained with high Q-factor wavelet analysis.