Although the basic structure of the axoneme has been highly conserved throughout evolution, the varied functions of specialized axonemes require differences in structure and regulation. Cilia lining the respiratory tract propel mucus along airway surfaces, providing a critical function to the defense mechanisms of the pulmonary system, yet little is known of their molecular structure. We have identified and cloned a dynein heavy chain that is a component of the inner dynein arm. Bronchial epithelial cells were obtained from normal donors and from a patient with primary ciliary dyskinesia (PCD) whose cilia demonstrated an absence of inner dynein arms by electron microscopy. Cilia from normal and PCD cells were compared by gel electrophoresis, and mass spectrometry was used to identify DNAH7 as a protein absent in PCD cilia. The full-length DNAH7 cDNA was cloned and shares 68% similarity with an inner arm dynein heavy chain from Drosophila. DNAH7 was induced during ciliated cell differentiation, and immunohistochemistry demonstrated the presence of DNAH7 in normal cilia. In cilia from PCD cells, DNAH7 was undetectable, whereas intracellular DNAH7 was clearly present. These studies identify DNAH7 as an inner arm component of human cilia that is synthesized but not assembled in a case of PCD.The basic structure of the axoneme consisting of nine outer microtubule doublets surrounding a central pair (9 ϩ 2 arrangement) is one of the most highly conserved structures in all of cell biology (1, 2). The 9 ϩ 2 arrangement is found in many diverse organisms ranging from the flagella of Chlamydomonas and the gill cilia of freshwater mussels to the sperm flagella of sea urchins and respiratory tract cilia of humans. Despite the structural similarity, each of these axonemes is specialized for a particular function. Thus, the waveform of a sperm flagellum (3), which functions to propel the sperm forward, is very different from the coordinated beating of respiratory tract cilia, which function to transport mucus over airway surfaces (4). Moreover, the regulation of the activity of each specialized axoneme is also likely to be unique. For example, increases in Ca 2ϩ have been shown to stimulate ciliary beating of tracheal epithelial cells (5), whereas Paramecium cilia respond to increased Ca 2ϩ by reversing the direction of beating (6). These functional differences are a reflection of unique modifications of the structure and composition of each specialized axoneme. For example, Chlamydomonas flagella have three outer arm dynein heavy chains (DHCs) 1 (7), whereas outer arms from mammalian respiratory cilia have been reported to contain only two DHCs (8). Therefore, it is clear that although the basic structure and components of cilia and flagella are conserved, specialization of function has resulted in important variations of structure and regulation among the different motile axonemes.The Chlamydomonas flagellum represents the most thoroughly characterized axonemal structure. Through the use of readily obtained mutants and comp...