The discrete Gel'fand-Yaglom theorem was studied several years ago. In the present paper, we generalize the discrete Gel'fand-Yaglom method to obtain the determinants of mass matrices which appear current works in particle physics, such as dimensional deconstruction and clockwork theory. Using the results, we show the expressions for vacuum energies in such various models. PACS: 02.10.Ox, 04.60.Nc, 11.10.Kk, 11.25.Mj.After completion of the first version of the manuscript of the present paper (arXiv:1711.06806), a paper which treats the determinants of discrete Laplace operators appeared [13]. Their method is substantially the same as ours, because the author also relies on the recurrence relation among three variables on a lattice (see Sec. 3 in the present paper and below). We recently become aware of another similar paper on the determinants of matrix differential operators [14]. They studied generalization of Gel'fand-Yaglom method to obtain the functional determinants. Their work differs essentially from ours because they considered differential operators while we treat matrices as operators. We also point out that they did not consider the matrices of large size which have certain continuum limits.The organization of this paper is as follows. In order to make the present paper selfcontained, we show a short review of the Gel'fand-Yaglom method for a differential operator, along with the Dunne's review [2], in Sec. 2. In Sec. 3, we give the method to obtain determinants of tridiagonal matrices with repeated structure. This is a straightforward generalization of description in Ref. [12]. In Sec. 4, we give the method to obtain determinants of periodic tridiagonal matrices. Determinants of extended periodic tridiagonal matrices are obtained in Sec. 5. The rest of the present paper is devoted to applications to deconstructed theories and discrete systems. In Sec. 6, free energy on a graph is discussed by using the results of previous sections. In Sec. 7, we show the method of calculation for evaluating one-loop vacuum energy in deconstructed models from the determinants of mass matrices. In Sec. 8, we show a few more examples of one-loop vacuum energies for slightly complicated theory spaces. We give conclusions in the last section, Sec. 9.