The question of whether distinct self-propagating structures could be formed within the same amino acid sequence in the absence of external cofactors or templates has important implications for a number of issues, including the origin of prion strains and the engineering of smart, self-assembling peptidebased biomaterials. In the current study, we showed that chemically identical prion protein can give rise to conformationally distinct, self-propagating amyloid structures in the absence of cellular cofactors, post-translational modification, or PrP Scspecified templates. Even more surprising, two self-replicating states were produced under identical solvent conditions, but under different shaking modes. Individual prion conformations were inherited by daughter fibrils in seeding experiments conducted under alternative shaking modes, illustrating the high fidelity of fibrillation reactions. Our study showed that the ability to acquire conformationally different self-propagating structures is an intrinsic ability of protein fibrillation and strongly supports the hypothesis that conformational variation in selfpropagating protein states underlies prion strain diversity.The existence of multiple prion strains is considered to be one of the most puzzling features of prion biology. According to the protein-only hypothesis of prion propagation, the normal cellular isoform of the prion protein, PrP C , can be converted into a range of self-propagating disease-related structures, referred to as strains of PrP Sc (1). Although certain physical properties are common for all PrP Sc strains, each strain also possesses unique strain-specific conformational features. Within the protein-only hypothesis, it is assumed that variation in PrP Sc structure can give rise to a broad range of strain-specific disease phenotypes, including substantial variation in incubation time to disease, in pathology, and in behavioral symptoms.In the past several years considerable evidence has accumulated indicating that prion strains do, indeed, exhibit notable differences in the amount and type of -sheet structure, conformational stability, proteolytic resistance, and surface-exposed epitopes (2-7). Although the results of these aforementioned studies were consistent with the protein-only hypothesis, the primary origin of strain-specific conformational variations remains unclear. What is the possible source of strain-specific structural variation in PrP Sc ? A "unified theory" of prion propagation postulates that the strain-specific features of the prion infectious agent may be encoded by a coprion, or small nucleic acid (8). Alternatively, the ability to adopt multiple self-propagating structures may be an intrinsic property of the fibrillation reaction itself and can be achieved in the absence of a coprion. In the past, two distinct amyloid states were produced from chemically identical A peptides (9); however, this property has never been demonstrated for fibrillation of larger polypeptides or global proteins such as PrP.In the current study...