Purpose
To predict if developing human embryos are permissive to multiple coronaviruses.
Method
We analyzed publicly available single-cell RNA-seq datasets of human embryos for the known canonical and non-canonical receptors and spike protein cleavage enzymes for multiple coronaviruses like SARS-CoV, SARS-CoV-2, MERS-CoV, hCoV-229E, and hCoV-NL63. We also analyzed the expression of host genes involved in viral replication, host proteins involved in viral endosomal sorting complexes required for transport (ESCRT), genes of host proteins that physically interact with proteins of SARS-CoV-2, and the host genes essential for coronavirus infectivity.
Results
Of the known receptors of SARS viruses,
ACE2
,
BSG
,
GOLGA7
, and
ZDHHC5
were expressed in different proportions in the zygote, 4-cell, 8-cell, morula, and blastocysts including the trophectoderm. The MERS-CoV receptor,
DPP4
, and hCoV-229E receptor,
ANPEP
, were expressed mainly from the compact morula to the blastocyst stages. Transcripts of the MERS-CoV alternate receptor
LGALS1
were detected in most cells at all stages of development.
TMPRSS2
transcripts were detected in the epiblast, primitive endoderm, and trophectoderm, while transcripts of the endosomal proteases
CTSL
,
CTSB
, and
FURIN
were expressed in most cells at all stages of development.
ACE2
and
TMPRSS2
were co-expressed in a proportion of epiblast and trophectoderm cells. The embryonic cells expressed genes involved in ESCRT, viral replication, SARS-CoV-2 interactions, and coronavirus infectivity. The
ACE2
and
TMPRSS2
co-expressing cells were enriched in genes associated with lipid metabolism, lysosome, peroxisome, and oxidative phosphorylation pathways.
Conclusion
Preimplantation and implantation stage human embryos could be permissive to multiple hCoVs.
Supplementary Information
The online version contains supplementary material available at 10.1007/s10815-021-02192-3.