“…Evidence that the nuclease protection of tRNA represents importation into the mitochondrion: Cleavage of a heterologous precursor tRNA by an intramitochondrial RNase P-like activity Pre-tRNA Asp from Bacillus subtilis is a precursor tRNA that is cleaved by RNase P into the mature tRNA and a 59 leader+ We found that incubation of T7-transcribed pre-tRNA Asp with L. tarentolae mitochondria in the presence of ATP produced a cleavage of the precursor into a species that comigrated with the mature tRNA and that was protected from nuclease digestion (Fig+ 4A)+ Another fragment appeared even at low ATP levels that comigrated with the 33-nt 59 leader, but as this fragment also appeared with 39 end-labeled pre-tRNA These data indicate that the nuclease protection of RNA represents importation into the matrix of the organelle, because there is processing of the pre-tRNA into a mature tRNA that is carried out by an RNase P-like cleavage activity localized within the mitochondrial matrix+ A similar activity was previously detected in mitochondria from Trypanosoma brucei (Hancock et al+, 1992)+ Additional evidence that the nuclease protection of tRNA represents importation into the mitochondrion: Titration with digitonin Digitonin selectively solubilizes the outer mitochondrial membrane at low concentrations due to the high levels of cholesterol in that membrane (Schnaitman & Greenawalt, 1968)+ RNAs attached to the outer mitochondrial membrane or the outer side of the inner mitochondrial membrane should be nuclease sensitive at low digitonin concentrations that should only break down the outer membrane+ However, RNAs within the matrix should become nuclease sensitive at higher digitonin concentrations that also break down the inner membrane+ To provide a matrix marker, endogenous matrix-localized tRNAs were 39-end labeled with [a-32 P]CTP by an intramitochondrial ATP(CTP) nucleotidyltransferase activity previously shown to exist in T. brucei mitochondria (Hancock et al+, 1992)+ In a parallel experiment, mitochondria were incubated with uniformly labeled tRNA Ile in the presence of ATP+ The nuclease protection of the tRNA Ile at increasing digitonin concentrations was compared to that of the labeled endogenous mitochondrial tRNAs+ As shown in Figure 6, the latency of the tRNA Ile with digitonin was identical within experimental error to that of the labeled endogenous tRNAs+ This suggests that the tRNA Ile was imported into the mitochondrial matrix and not sequestered on the surface in a nucleaseresistant manner+ This method of digitonin solubilization has been used previously to show that tagged tRNAs transcribed from plasmids in vivo are targeted to the mitochondrial matrix (Lima & Simpson, 1996)+ Lack of requirement for a membrane potential L. tarentolae mitochondria isolated in Percoll gradients after hypotonic (Fig+ 7A) or isotonic (Fig+ 7B) cell breakage have measurable membrane potentials, as determined using the potential-sensitive fluorescent dye, diS-C 3 -(5) (Sims et al+, 1974;Hwang et al+, 1989;Hauser et al+, 1996)+ Furthermore, freezing the mitochondria at Gln (squares)+ B: Labeled tRNA Gln (3 pmol, 2+4 ϫ 10 4 cpm) was incubated with mitochondria in the presence of increasing amounts of unlabeled tRNA Ile (circles) or tRNA Gln (squares)+ The extent of nuclease protection was analyzed as described in Materials and methods+ Ϫ80 8C in glycerol had little effect on either the membrane potential or the nuclease p...…”