It is known that chronodisruption, occuring in rotating light cycle conditions and jetlag, desynchronizes peripheral clocks leading to metabolic disease. However, there is insufficient information on the mechanisms responsible for driving this desynchronization. Using a jetlag mouse model, Desmet et al 1 demonstrated that disrupted food intake patterns was associated with alterations in the rhythmicity of microbial metabolite production, specifically the short chain fatty acids (SCFAs) propionate and butyrate. Furthermore, changes in the rhythmicity of these SCFAs were associated with changes in the rhythmic expression of specific gut epithelial markers. 1 Mammalian metabolism is synchronized to the light-dark cycle and fluctuates over a period of about twenty-four hours (Figure 1). These rhythms are orchestrated by the central clock, located in the hypothalamic suprachiasmatic nucleus (SCN). The SCN acquires information from the retina, via the retinohypothalamic tract, enabling the SCN to maintain rhythms in line with the light-dark cycle. In turn, the SCN synchronizes other clocks located in other regions of the brain and the periphery. The highly conserved molecular mechanisms that drive the circadian oscillations are composed of transcriptional-translational feedback loops which consist of positive and negative elements. Positive elements include Circadian Locomotor Output Cycles Kaput (CLOCK), Brain and Muscle Aryl hydrocarbon Receptor Nuclear Translocatorlike 1 (ARNT1, also known as BMAL1) and neuronal PAS domain protein 2 (NPAS2). These positive elements form heterodimers, including BMAL1/CLOCK or BMAL1/ NPAS2, which enter the nucleus and promote transcription of the negative elements, such as Period 1 (Per1), Per2, Per3, cryptochrome 1 (Cry1) and Cry2. The protein products of these negative transcriptional factors then enter the nucleus and inhibit the activity of the positive heterodimer complex. Consequently, they inhibit their own transcription, allowing a build-up of positive elements and, ultimately, initiating a new cycle. These clock mechanisms exist throughout the body and play an important role in regulating the intake/synthesis, storage and expenditure of energy. 2 The light-dark cycle is likely the most potent external cue (zeitgeber: ZT) for the central clock, however, peripheral clocks, such as those in