2005
DOI: 10.1021/bi0481040
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Distance and Affinity Dependence of Triplex-Induced Recombination

Abstract: Triplex-forming oligonucleotides (TFOs) have the potential to serve as gene therapeutic agents on the basis of their ability to mediate site-specific genome modification via induced recombination. However, high-affinity triplex formation is limited to polypurine/polypyrimidine sites in duplex DNA. Because of this sequence restriction, careful analysis is needed to identify suitable TFO target sites within or near genes of interest. We report here an examination of two key parameters which influence the efficie… Show more

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Cited by 31 publications
(30 citation statements)
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“…From the data presented in Figure 9 it is seen that target binding of PNA3051 did not using the oligonucleotide donor. These results parallel previous findings 28,29 showing that unconjugated (deoxyribosephophate) TFOs can stimulate the correction of nearby mutations using single-stranded oligonucleotide donors.…”
Section: Effects Of Triplex Pnas In An Ex Vivo Cellular Assaysupporting
confidence: 91%
“…From the data presented in Figure 9 it is seen that target binding of PNA3051 did not using the oligonucleotide donor. These results parallel previous findings 28,29 showing that unconjugated (deoxyribosephophate) TFOs can stimulate the correction of nearby mutations using single-stranded oligonucleotide donors.…”
Section: Effects Of Triplex Pnas In An Ex Vivo Cellular Assaysupporting
confidence: 91%
“…Due to the small number of sequences analyzed in each of these studies, the pattern was not detected. Polypurine (pPu) tracts and their complementary pPy tracts are believed to stimulate recombination (4,(21)(22)(23). They can form triplex DNA, which can stabilize strand invasion events (21)(22)(23).…”
Section: Discussionmentioning
confidence: 99%
“…Polypurine (pPu) tracts and their complementary pPy tracts are believed to stimulate recombination (4,(21)(22)(23). They can form triplex DNA, which can stabilize strand invasion events (21)(22)(23). In addition, pPy tracts as short as 18 bp have been demonstrated to promote oligonucleotide-directed gene correction at least 23 bp away in vivo and strand invasion (D-loop formation) at sites up to 4 kb away in vitro (4).…”
Section: Discussionmentioning
confidence: 99%
“…The plucTC18 vector was derived from a plasmid constructed by subcloning the firefly luciferase gene Fluc+ (pGL3-Basic Vector; Promega) into pcDNA5/FRT (Invitrogen) (25). The TC18 target site was inserted 40 bp upstream of the Fluc+ start site.…”
Section: Methodsmentioning
confidence: 99%