Distinct Distribution of Archaea From Soil to Freshwater to Estuary: Implications of Archaeal Composition and Function in Different Environments

Wang, Hualong; Bier, Raven L.; Zgleszewski, Laura; Peipoch, Marc; Omondi, Emmanuel C.; Mukherjee, Atanu; Chen, Feng; Zhang, Chuanlun; Kan, Jinjun

doi:10.3389/fmicb.2020.576661

Cited by 24 publications

(13 citation statements)

References 76 publications

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“…Yu, Lawrence, Sooksa-nguan, Smith, Tenesaca, Howe, and Hall [56] found that typically Nitrososphaeraceae (F) are AOA and positively associated with pH, but the pH relationship depended on niche specialties of certain archaea. Woesearchaeia (C) and Thermoplasmata (C) Marine Group II are typically found in aquatic ecosystems [112][113][114]. However, Wang et al [115] found both archaea ASVs in agricultural and estuarial soils, noting that the agricultural soils contained significantly greater abundance, richness, evenness, and diversity than freshwater or estuarine ecosystems.…”

Section: Discussionmentioning

confidence: 99%

Soil Microbial Indicators within Rotations and Tillage Systems

et al. 2021

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Recent advancements in agricultural metagenomics allow for characterizing microbial indicators of soil health brought on by changes in management decisions, which ultimately affect the soil environment. Field-scale studies investigating the microbial taxa from agricultural experiments are sparse, with none investigating the long-term effect of crop rotation and tillage on microbial indicator species. Therefore, our goal was to determine the effect of rotations (continuous corn, CCC; continuous soybean, SSS; and each phase of a corn-soybean rotation, Cs and Sc) and tillage (no-till, NT; and chisel tillage, T) on the soil microbial community composition following 20 years of management. We found that crop rotation and tillage influence the soil environment by altering key soil properties, such as pH and soil organic matter (SOM). Monoculture corn lowered pH compared to SSS (5.9 vs. 6.9, respectively) but increased SOM (5.4% vs. 4.6%, respectively). Bacterial indicator microbes were categorized into two groups: SOM dependent and acidophile vs. N adverse and neutrophile. Fungi preferred the CCC rotation, characterized by low pH. Archaeal indicators were mainly ammonia oxidizers with species occupying niches at contrasting pHs. Numerous indicator microbes are involved with N cycling due to the fertilizer-rich environment, prone to aquatic or gaseous losses.

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Section: Discussionmentioning

confidence: 99%

Soil Microbial Indicators within Rotations and Tillage Systems

et al. 2021

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“…In this study, archaeal abundance showed a positive correlation with soil basal respiration, which was a major process that controlled the C loss from terrestrial ecosystem. This result suggested that archaea, instead of bacteria and fungi may play crucial roles in soil C mineralization in urban forests in Shanghai, China (Wang et al., 2020; Yu et al., 2021).…”

Section: Discussionmentioning

confidence: 99%

Mixed plantations ofMetasequoia glyptostroboidesandBischofia polycarpachange soil fungal and archaeal communities and enhance soil phosphorus availability in Shanghai, China

Zhang

et al. 2021

Ecology and Evolution

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“…Denitrification of soil by ammonia-oxidizing archaea (AOA) oxidizes nitrite to nitrate. Thaumarchaeota is the largest contributor to ammonium oxidation and one of the most abundant in the planet and easily found in the soil [40][41][42]. Thaumarchaeota is known to live in a wide range of environmental conditions.…”

Section: Bacteriamentioning

confidence: 99%

“…They live in fresh water to oceans, from pH 3.5 to pH 8.7, and from low temperature environment such as Artic to very high temperature environments (between 74 • C to 124 • C) such as hot springs [41]. They receive ammonia from urea and cyanate [42]. However, nitrification process by AOA may also lead to nitrate leaching from soils, causing groundwater and surface contamination with nitrous oxide (N 2 0), resulting in further acceleration of global warming [15].…”

Section: Bacteriamentioning

confidence: 99%

Effects of Abiotic Stress on Soil Microbiome

Rahman

Hamid

Nadarajah

2021

IJMS

137

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Rhizospheric organisms have a unique manner of existence since many factors can influence the shape of the microbiome. As we all know, harnessing the interaction between soil microbes and plants is critical for sustainable agriculture and ecosystems. We can achieve sustainable agricultural practice by incorporating plant-microbiome interaction as a positive technology. The contribution of this interaction has piqued the interest of experts, who plan to do more research using beneficial microorganism in order to accomplish this vision. Plants engage in a wide range of interrelationship with soil microorganism, spanning the entire spectrum of ecological potential which can be mutualistic, commensal, neutral, exploitative, or competitive. Mutualistic microorganism found in plant-associated microbial communities assist their host in a number of ways. Many studies have demonstrated that the soil microbiome may provide significant advantages to the host plant. However, various soil conditions (pH, temperature, oxygen, physics-chemistry and moisture), soil environments (drought, submergence, metal toxicity and salinity), plant types/genotype, and agricultural practices may result in distinct microbial composition and characteristics, as well as its mechanism to promote plant development and defence against all these stressors. In this paper, we provide an in-depth overview of how the above factors are able to affect the soil microbial structure and communities and change above and below ground interactions. Future prospects will also be discussed.

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Distinct Distribution of Archaea From Soil to Freshwater to Estuary: Implications of Archaeal Composition and Function in Different Environments

Cited by 24 publications

References 76 publications

Soil Microbial Indicators within Rotations and Tillage Systems

Soil Microbial Indicators within Rotations and Tillage Systems

Mixed plantations ofMetasequoia glyptostroboidesandBischofia polycarpachange soil fungal and archaeal communities and enhance soil phosphorus availability in Shanghai, China

Effects of Abiotic Stress on Soil Microbiome

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