Distribution and parameters of genetic polymorphism in northern red-backed vole (Clethrionomys rutilus) and bank vole (Clethrionomys glareolus) in West Siberia

Zhigileva, O. N.; Gorbacheva, E. V.

doi:10.1134/s1995425517010139

Cited by 4 publications

(2 citation statements)

References 19 publications

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“…Numerous studies have been used ISSR markers for the determination of relationship degrees in sibling, cryptic, sympatric animals and plant species. In these studies, the reliability of ISSR markers were also confirmed by the use of different marker such as cytochrome b gene analysis of mtDNA, isoenzymes, ISSR and RAPD PCR (Bugarski-Stanojević et al, 2008;Jojić et al, 2014;Zhigileva et al, 2014;Buczkowska et al, 2016;Styan et al, 2017;Zhigileva & Gorbacheva, 2017). Similarly, in our study, ISSR markers were functional and convenient for the estimation of genetic diversity and relations in N. xanthodon cytotypes (2n = 54, 2n = 60).…”

Section: Discussionsupporting

confidence: 77%

Using ISSR markers in determination of genetic relationship between 2n = 54 and 2n = 60 cytotypes of Nannospalax xanthodon (Nordmann, 1840) (Mammalia, Rodentia) from Central Anatolia

Yağcı¹,

Şen²,

Gurbanov³

2018

Rus.J.Theriol.

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A total of 36 samples of 2n = 54 and 2n = 60 cytotypes of Nannospalax xanthodon, distributed in the Central Anatolia region of Turkey, were analyzed for the first time by using inter-simple sequence repeat-polymerase chain reaction (ISSR-PCR) technique. The analysis revealed 112 ISSR bands, 101 of which were polymorphic. Seven ISSR primers ((AG) 8 T, (GGAGA) 5 , (GACA) 4 , (TG) 8 A, (CAG) 5 GC, (CAG) 4 AC and (GA) 8 AC)) were optimized from total 20 primers. (AG) 8 T and (GA) 8 AC primers were most informative to distinguish cytotypes by producing specific bands for 2n = 54 and 2n = 60. The cytotypes in genetically close relationships were separated into three different groups by UPGMA cluster analysis, in which, the highest genetic diversity was measured for 2n = 60. Our results showed that ISSR markers can be used as a simple and reliable molecular tool, for the estimation of genetic diversity in cytotypes of Nannospalax at low range genetic distances. How to cite this article:

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Section: Discussionsupporting

confidence: 77%

Using ISSR markers in determination of genetic relationship between 2n = 54 and 2n = 60 cytotypes of Nannospalax xanthodon (Nordmann, 1840) (Mammalia, Rodentia) from Central Anatolia

Yağcı¹,

Şen²,

Gurbanov³

2018

Rus.J.Theriol.

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“…Although Remington (1968) suggested that other suture zones could be found in the Ural and central Europe, for a long time, these regions have been treated cursorily and omitted in phylogeographic studies. Moreover, high inaccessibility of data from eastern Europe (such as from the Russian Federation, Belarus, or Ukraine) is also a challenge, as data is frequently published only in Russian, or translated into English with a delay (Pavlov 1999;Abramson et al 2009;Bulatova et al 2010;Zhigileva and Gorbacheva 2017;Sibiryakov et al 2018).…”

Section: Introductionmentioning

confidence: 99%

Polish suture zone as the goblet of truth in post-glacial history of mammals in Europe

Stojak

Tarnowska

2019

Mamm Res

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Present-day species distribution and patterns of genetic diversity in Europe are a result of post-glacial re-colonization from glacial refugia after the Last Glacial Maximum. This process led to the formation of secondary contact zones (suture zones) between the haplogroups of different species, and were induced by several factors, including climate and evolutionary processes like selection and adaptation. One such suture zone has been found in Poland, where a complex network of different phylogenetic lineages of predators, ungulates, and rodents is present. The phylogeography of mammals in western Europe has been widely studied, but central and eastern Europe have been treated cursorily. Only a few samples from these areas were analyzed in previous studies, resulting in a simplified and false description of local genetic structure. In this review, results of previous phylogeographic studies on carnivore, ungulate, and rodent species from central and eastern Europe were collected and synthesized to verify the Polish suture zone hypothesis and examine how it is affected by different variables (geomorphological features like the Carpathian Mountains and Vistula River, climate, or anthropogenic factors). Our data reflects the importance of precise studies in this region and the value they contribute to further studies of large-scale European phylogeography.

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Genetic polymorphism in populations of voles and shrews from the Kronotsky Reserve (Kamchatka Peninsula, Russia)

2020

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We studied genetic polymorphism of four mammal species Myodes rutilus, Myodes rufocanus, Sorex isodon, from four localities, the Valley of Geysers, Uzon volcanic caldera, the Death Valley, and the Shore of Kuril Lake. In total, 172 individuals were genotyped using the inter-simple sequence repeat technique. We observed the lowest polymorphism in shrews S. caecutiens. In this species, 68.8 % of bands were polymorphic, and Nei’s genetic diversity (h) was 0.27, while these values in S. isodon were 81.3 % and 0.29, respectively. Populations of M. rufocanus were the most polymorphic among the studied species (P = 91.4, h = 0.34). Polymorphism in M. rutilus from Kamchatka (P = 87.2, h = 0.29) was similar to that from Western Siberia. In addition, we found a high genetic differentiation of rodent populations. The interpopulation component of genetic variability was about 30–40 % (GST = 0.31 in M. rutilus and 0.39 in M. rufocanus). Gene flow among populations of M. rutilus from Kamchatka was two times lower than that of populations of the species from taiga ecosystems in Siberia. Key words: Myodes, Sorex, Differentiation of populations, Genetic variability, ISSR markers, Kamchatka Peninsula

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Distribution and parameters of genetic polymorphism in northern red-backed vole (Clethrionomys rutilus) and bank vole (Clethrionomys glareolus) in West Siberia

Cited by 4 publications

References 19 publications

Using ISSR markers in determination of genetic relationship between 2n = 54 and 2n = 60 cytotypes of Nannospalax xanthodon (Nordmann, 1840) (Mammalia, Rodentia) from Central Anatolia

Using ISSR markers in determination of genetic relationship between 2n = 54 and 2n = 60 cytotypes of Nannospalax xanthodon (Nordmann, 1840) (Mammalia, Rodentia) from Central Anatolia

Polish suture zone as the goblet of truth in post-glacial history of mammals in Europe

Genetic polymorphism in populations of voles and shrews from the Kronotsky Reserve (Kamchatka Peninsula, Russia)

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