34Ancient fermented food has been studied based on recipes, residue analysis and ancient-DNA 35 techniques and reconstructed using modern domesticated yeast. Here, we present a novel 36 approach. We hypothesize that enriched yeast populations in fermented beverages could have 37 become the dominant species in storage vessels and the descendants of these yeast could be 38 isolated and studied long after. To this end, using a pipeline of yeast isolation from clay vessels 39 developed here, we screened for yeast cells in beverage-related and non-related ancient vessels 40 and sediments, from several archeological sites. We found that yeast cells could be successfully 41 isolated specifically from clay containers of fermented beverages. Genomic analysis revealed that 42 these yeast are similar to those found in traditional African beverages. Phenotypically, they grow 43 similar to modern-beer producing yeast. Both strongly suggesting that they are descendants of 44 the original fermenting yeast. These findings provide modern microorganisms as a new tool in 45 bio-archeology.
46Importance 47 So far, most of the study of ancient organisms was based mainly on the analysis of ancient DNA.
48Here we show that it is possible to isolate and study microorganisms, yeast in this case, from 49 thousands of years old clay vessels, used for fermentation. We demonstrate that it is highly likely 50 that these cells are descendants of the original yeast strains which participated in the fermentation 51 process and were absorbed into the pottery vessels. Moreover, we characterize the isolated yeast 52 their genome and the beer they produce. These results open new and exciting avenues in the 53 study of domesticated microorganisms and contribute significantly to the fields of bio and 54 experimental -archeology that aims to reconstruct ancient artifacts and products.55 56 57 58 109 5containers. In contrast, we could not isolate any live yeast from the control vessels which were 110 filled with filtered beer, nor were yeast cells detected by electron microscopy (Fig. 1A, left panel).