Knowledge about the O-linked glycan chains of tumorassociated MUC1 is primarily based on enzymatic and immunochemical evidence. To obtain structural information and to overcome limitations by the scarcity of endogenous mucin, we expressed a recombinant glycosylation probe corresponding to six MUC1 tandem repeats in four breast cancer cell lines. Comparative analyses of the O-glycan profiles were performed after hydrazinolysis and normal phase chromatography of 2-aminobenzamide-labeled glycans. Except for a general reduction in the O-glycan chain lengths and a high density glycosylation, no common structural pattern was revealed. T47D fusion protein exhibits an almost complete shift from core 2 to core 1 expression with a preponderance of sialylated glycans. By contrast, MCF-7, MDA-MB231, and ZR75-1 cells glycosylate the MUC1 repeat peptide preferentially with core 2-based glycans terminating mostly with ␣3-linked sialic acid (MDA-MB231, ZR75-1) or ␣2/3-linked fucose (MCF-7). Endogenous MUC1 from T47D and MCF-7 cell supernatants revealed almost identical O-glycosylation profiles compared with the respective recombinant probes, indicating that the fusion proteins reflected the authentic Oglycan profiles of the cells. The structural patterns in the majority of cells under study are in conflict with biosynthetic models of MUC1 O-glycosylation in breast cancer, which claim that the truncation of normal core 2-based polylactosamine structures to short sialylated core 1-based glycans is due to the reduced activity of core 2-forming 6-N-acetylglucosaminyltransferases and/or to overexpression of competitive ␣3-sialyltransferase.The cell membrane-associated human mucin MUC1 is expressed by most epithelia (1) and some subsets of lymphocytes (2, 3). It is overexpressed by many carcinomas, and an altered glycosylation pattern results in tumor-specific exposure of peptide epitopes (4), making MUC1 a promising tumor antigen with diagnostic as well as therapeutic potential in the treatment of cancer (5-7).Mature MUC1 consists of two subunits that are proteolytically derived from a common precursor peptide and form a stable heterodimeric complex. The smaller subunit contains a C-terminal cytoplasmic domain, the membrane-spanning domain, and a short extracellular sequence that is noncovalently linked to the larger, extracellular subunit, which contains the extensively O-glycosylated mucin domain (8). After its first appearance on the cell membrane, the complex is internalized and recycled several times for follow-up sialylation in the trans-Golgi (9). Mature glycoforms of the mucin can remain on the cell surface or become shed by still unknown mechanisms (9).MUC1 contains five potential N-glycosylation sites, three of which are located in the membrane-associated subunit and two near the C terminus of the extracellular subunit. However, the bulk of glycosylation, which can make up between 50 and 80% of the total mass, is O-linked to numerous threonine and serine residues in the mucin domain. This domain comprises a variable numbe...