DNA barcoding of marine polychaetes species of southern Patagonian fjords

Maturana, Claudia S.; Moreno, Rodrigo A.; Labra, Fabio A.; González‐Wevar, Claudio A.; Rozbaczylo, Nicolás; Carrasco, Franklin D.; Poulin, Élie

doi:10.4067/s0718-19572011000100005

Cited by 19 publications

(10 citation statements)

References 55 publications

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“…According to the results of Hebert et al (2003b), the divergence of COI barcode sequences among the 13,320 congeneric species pairs within 11 animal phyla ranged from 0.0% to 53.7%. The mean interspecific divergences were found to be between 5.8% and >100% in mammals (Borisenko et al 2008;Cai et al 2011;Li et al 2011;Alvarez-Castañeda et al 2012;Bondoc 2013;Echi et al 2013), although the mean interspecific divergences ranged from 4.41% to 47% in other animals such as lepidopterans (Hajibabaei et al 2006b), marine polychaetes, (Maturana et al 2011) and freshwater fish (Ward et al 2005;Lara et al 2010). In this study, the mean intraspecific divergence (0.61%) fell within the mean divergence ranges previously found in other mammal groups (Lorenz et al 2005;Clare et al 2007;Borisenko et al 2008;Cai et al 2011).…”

Section: Discussionsupporting

confidence: 74%

“…Based on COI barcode sequences, mammals show a higher mean intraspecific divergence values compared to that of other animal groups. These values ranged from 0.60% to 1.1% in mammals (Lorenz et al 2005;Hajibabaei et al 2006a;Clare et al 2007;Borisenko et al 2008;Cai et al 2011) but from 0.17% to 0.46% in other animal groups (Ward et al 2005;Hajibabaei et al 2006b;Kerr et al 2007;Maturana et al 2011). According to the results of Hebert et al (2003b), the divergence of COI barcode sequences among the 13,320 congeneric species pairs within 11 animal phyla ranged from 0.0% to 53.7%.…”

Section: Discussionmentioning

confidence: 93%

“…There are a considerable amount of DNA barcoding studies on the animal kingdom, such as bovids (Cai et al 2011), primates (Lorenz et al 2005;Hajibabaei et al 2006a), bats (Clare et al 2007), other mammals (Borisenko et al 2008;Li et al 2011;Alvarez-Castañeda et al 2012;Bondoc 2013;Echi et al 2013;Bondoc et al 2014), lepidopterans (Hajibabaei et al 2006b;Mutanen et al 2015), marine polychaetes (Maturana et al 2011), fishes (Ward et al 2005;Lara et al 2010) and birds (Kerr et al 2007). Based on COI barcode sequences, mammals show a higher mean intraspecific divergence values compared to that of other animal groups.…”

Section: Discussionmentioning

confidence: 97%

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DNA barcoding of three species ( Canis aureus, Canis lupus and Vulpes vulpes ) of Canidae

Aksöyek

İbiş

Özcan

et al. 2016

Mitochondrial DNA Part A

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Sequences of the mitochondrial cytochrome c oxidase subunit I (COI) gene have been used for DNA barcoding and determining the genetic diversity of mammal species. In the current study, our intention was to test the validity of COI barcodes for detecting genetic divergence and to reveal whether or not there is a genetic variation at this marker within canids. Three species (Canis aureus, Canis lupus and Vulpes vulpes) from the family Canidae were selected for DNA barcoding using samples collected from Iran and Turkey. All three species had unique barcoding sequences and none of the sequences were shared among these species. The mean sequence divergences within and among the species were 0.61% and 12.32%, respectively, which fell into the mean divergence ranges found in some mammal groups. The genetic diversity of these three canid species was relatively higher than that found in previously reported studies.

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Section: Discussionsupporting

confidence: 74%

Section: Discussionmentioning

confidence: 93%

Section: Discussionmentioning

confidence: 97%

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DNA barcoding of three species ( Canis aureus, Canis lupus and Vulpes vulpes ) of Canidae

Aksöyek

İbiş

Özcan

et al. 2016

Mitochondrial DNA Part A

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“…Maturana et al (2011) dieron a conocer los primeros resultados sobre código de barras genético (DNA barcoding) de poliquetos en Chile, de 13 especies recolectadas durante el crucero CIMAR 13. Quiroga y Levin (2010) dieron a conocer un nuevo registro de Eunice pennata en una emanación fría de metano (cold seep) entre 460 y 697 m de profundidad en la región de Aysén (46º55'S; 75º35'O), mientras que Soto y Paterson (2010), estudiaron la composición, abundancia y riqueza de poliquetos bentónicos intermareales y submareales someros recolectados en tres campañas estivales realizadas entre los años 2001 y 2003 como parte de un proyecto sobre biodiversidad de Aysén.…”

Section: Introductionunclassified

Poliquetos bentónicos Amphinomida, Phyllodocida y Eunicida (Annelida: Polychaeta) de la región de fiordos y canales australes de Chile recolectados durante los cruceros CIMAR 13 al 20 fiordos

Rozbaczylo¹,

Vásquez-Yáñez²,

Moreno

et al. 2017

Anales Instituto Patagonia (Chile)

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Palabras clave:Biodiversidad, aguas templadas-frías, Provincia Magallánica, Pacífico suroriental. AbstractBenthic polychaetes belonging to Amphinomida, Phyllodocida and Eunicida orders collected in the austral Chilean channel and fjord region, in the Magellanic biogeographic province (42ºS-56ºS), from the Reloncaví estuary (41°25'S) to Obstruction estuary (52°11'S), between 26 and 1173 meters water depth, were identified and characterized. Polychaetes were collected during the research cruises CIMAR 13, 14, 15, 17, 18 and 20 Fjords, between the years 2007 and 2014 (CIMAR; Marine Research Cruises in Remote Areas). One hundred

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“…Species identification for all the collected invertebrate samples was conducted by morphological observations or PCR amplification of the mitochondrial cytochrome c oxidase subunit I (mt COI) gene as described by Maturana et al (2011). For molecular identification, PCR primers targeting the partial mt COI gene described by Folmer et al (1994) were used.…”

Section: Collection Of Marine Invertebrates and Species Identificationmentioning

confidence: 99%

Molecular detection of Kudoa septempunctata (Myxozoa: Multivalvulida) in sea water and marine invertebrates

et al. 2017

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The exportation of cultured olive flounder (Paralichthys olivaceus) in Korea has been recently decreasing due to the infections with a myxozoan parasite Kudoa septempunctata, and there is a strong demand for strict food safety management because the food poisoning associated with consumption of raw olive flounder harbouring K. septempunctata has been frequently reported in Japan. The life cycle and infection dynamics of K. septempunctata in aquatic environment are currently unknown, which hamper establishment of effective control methods. We investigated sea water and marine invertebrates collected from olive flounder farms for detecting K. septempunctata by DNA-based analysis, to elucidate infection dynamics of K. septempunctata in aquaculture farms. In addition, live marine polychaetes were collected and maintained in well plates to find any possible actinosporean state of K. septempunctata. The level of K. septempunctata DNA in rearing water fluctuated during the sampling period but the DNA was not detected in summer (June-July in farm A and August in farm B). K. septempunctata DNA was also detected in the polychaetes Naineris laevigata intestinal samples, showing decreased pattern of 40 to 0%. No actinosporean stage of K. septempunctata was observed in the polychaetes by microscopy. The absence of K. septempunctata DNA in rearing water of fish farm and the polychaetes N. laevigata intestinal samples during late spring and early summer indicate that the infection may not occur during this period. N. laevigata was suspected as the possible alternate invertebrate host of K. septempunctata, but the actinosporean stage was not found by well plate method and further studies will be necessary. This research provides important baseline information for understanding the infection dynamics of K. septempunctata in olive flounder farms and further establishment of control strategies.

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DNA barcoding of marine polychaetes species of southern Patagonian fjords

Cited by 19 publications

References 55 publications

DNA barcoding of three species ( Canis aureus, Canis lupus and Vulpes vulpes ) of Canidae

DNA barcoding of three species ( Canis aureus, Canis lupus and Vulpes vulpes ) of Canidae

Poliquetos bentónicos Amphinomida, Phyllodocida y Eunicida (Annelida: Polychaeta) de la región de fiordos y canales australes de Chile recolectados durante los cruceros CIMAR 13 al 20 fiordos

Molecular detection of Kudoa septempunctata (Myxozoa: Multivalvulida) in sea water and marine invertebrates

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