The objective of this study was to assess sperm DNA longevity in blue mussels (Mytilus edulis) using a dynamic assessment of sperm DNA fragmentation (SDF) after sperm activation. Mature blue mussels (n = 57) in Vigo (Galicia, Spain) were obtained, specifically rope farmed blue mussels (n = 38) and wild blue mussels (n = 19). After the sperm collection, a subsample was assessed for SDF (0 h), while the rest of the sample was incubated for 6, 9, 12, 24 and 48 h at 15°C, assessing each time point using the Sperm-Halomax kit (Halotech DNA, Madrid, Spain). The Kaplan-Meier estimator, log-rank (Mantel-Cox) test and Mann-Whitney U-test were used for statistical analyses (SPSS v. 16.0), a = 0.05. The rate of SDF (r-SDF) between rope farmed and wild blue mussels over 0-6 h incubation was not significantly different (P = 0.278), but was for 6-24 h (P = 0.004). Differences in r-SDF were observed when comparing the means between the two groups (P < 0.0001). Individual differences in r-SDF existed among the rope farmed (P < 0.0001) and wild blue mussels (P < 0.0001). Wild blue mussels presented a higher DNA longevity than the farmed blue mussels. Selection of blue mussel males with a low level of sperm DNA damage and greater sperm DNA longevity may result in better fertilization and seed production.