Prostate cancer is among the most common cancers. Although it has a relatively good prognosis , 15 to 30% of men with prostate cancer experience a relapse after radical prostatectomy. Identifying patients with an aggressive tumor will therefore help to improve prostate cancer management. DNA methylation of PITX2 has been established in several studies as a prognostic biomarker for breast and prostate cancer. These case control studies were conducted using research assay components; to facilitate its use in a diagnostic setting, the PITX2 biomarker was transferred to a validated diagnostic platform, the Affymetrix GeneChip System. A customized microarray (Epichip PITX2) was designed using features in high redundancy to ensure a robust determination of the methylation state of the PITX2 promoter. The developed method allowed for accurate assessment of prognosis in prostate cancer patients who underwent radical prostatectomy. Determination of PITX2 methylation in formalin-fixed and paraffin-embedded tissue samples from a cohort of 157 prostatectomy patients resulted in an excellent level of concordance of the clinical classification, as well as the measured output between the research assay and the Epichip PITX2. These analytical performance results describe the Epichip PITX2 as a robust and reliable diagnostic tool for assessing the methylation status of PITX2, enabling an improved outcome prediction in cancer patients following radical prostatectomy. Prostate cancer affects one in six men and is the fifth most common cancer in the world. It is the second most common cancer in men, with about 900,000 new cases expected in 2010.
1Radical prostatectomy is commonly used as potentially curative treatment in patients with clinically localized prostate cancer. However, recurrent rise in prostate specific antigen affects 15 to 30% of men.2 Consequently, the stratification of individuals based on the likelihood of cancer recurrence in men at high risk for prostate cancer progression and men at low risk is very important. This classification influences patient decision-making and results in modified treatment plans.DNA methylation plays an important role in fundamental biological processes, such as development and cell differentiation (for review 3 ). In addition, DNA methylation has been shown to play a major role in carcinogenesis (for review 4 -6 ), suggesting that DNA methylation analysis may be a valuable source for cancer biomarkers.Identification of genes that undergo cancer-specific changes of CpG methylation and correlation of these data with tumor stage, progression, and long-term prognosis are becoming increasingly common. Several studies report the suitability of DNA methylation as a biomarker for prognosis in various cancers, ie, breast, prostate, gastric, colon, cervical, and ovarian cancers.7-21 DNA methylation of PITX2 has been shown to be strongly associated with a poor outcome in lymph-node negative, hormone-receptor positive breast cancer, as well as in lymph node-positive, estrogen receptor-positive ...