Temperate Bacillus subtilis phages SPR, q3T, e l l and SPB code for DNA methyltransferases, each having multiple sequence specificities. The SPR wild-type and various mutant methyltransferases were overproduced 1 000-fold in Escherichia coli and were purified by three consecutive chromatographic steps.The stable form of these multispecific enzymes in solution are monomers with a relative molecular mass (M,) of about 50000. The methyl-transfer kinetics of the SPR wild-type and mutant enzymes were determined with DNA substrates carrying either none or one of the three recognition sequences (GGCC, CCGG, CC,^CG).Evaluation of the catalytic properties for DNA and S-adenosylmethionine binding suggested that the N H1-terminal part of the protein is important for both non-sequence-specific DNA binding and S-adenosylmethonine binding as well as transfer of methyl groups. On the other hand, mutations in the COOH-terminal part lead to weaker site-specific interactions of the enzyme.Antibodies raised against the purified SPR enzyme specifically immunoprecipitated the q3T, el 1 and SPB methyltransferases, but failed to precipitate the chromosomally coded enzymes from B. subtilis (BsuRI) and B. sphaericus (BspRI). Immunoaffinity chromatography is an efficient purification step for the related phage methyltransferases.The temperate Bacillus subtilis phages SPR, q3T, el 1 and SPP have evolved a protection mechanism against host restriction enzymes by self-methylating their DNA at various sequences [l]. q3T, e l l and SPP methyltransferases have the potential to methylate the sequences GGCC (HaeIIIIBsuRI) and GCNGC (Fnu4HI) [2], while the SPR methyltransferase recognizes three sequences: GGCC [3], CCGG (HpaII/ MspIIBsuF) [4, 51 and C&GG (EcoRII) (U. Gunthert and L. Reiners, unpublished results). The asterisk denotes the position of methylation.Like the related type I1 modification enzymes, the phagederived methyltransferases are composed of a single polypeptide. As calculated from the DNA sequence, the SPR methyltransferase gene encodes a 439-residue protein with a M , = 49826 [6]. An approximate M , of 47000 for the q3T, e l l and SPP enzymes has been determined by minicell expression studies and in an in vitro transcription/translation system [7].A set of SPR methyltransferase mutants has been isolated and the positions of the mutations localized in the methyltransferase coding region [6] represented in this study by the SPR26 methyltransferase [3], is affected in its ability to methylate all three sequences. Another group of mutants is altered in their ability to interact with either the GGCC sequence (SPR19) [4] or the CCGG sequence (SPR83) [6]. A mutation which affects methylation at CC&G has not yet been identified. Another mutation (a frame-shift) has been isolated, which codes for a truncated protein of M, 28000 (SPRlOl) [6] showing reduced sitespecific methylation (U. Gunthert and L. Keiners, unpublished results).The goal of our research is the understanding of interactions between enzymes and DNA and these methyltrans€...