DtxR is an iron-dependent sequence-specific DNA-binding protein that binds to the tox operator, an inverted-repeat nucleotide sequence located upstream from the diphtheria toxin gene. In this study, two additional iron-regulated promoter/operator sequences (IRP1 and IRP2) It has been known for more than 50 years that the production of diphtheria toxin by Corynebacterium diphtheriae is negatively regulated by iron (24, 25). More recently, diphtheria toxin and the corynebacterial siderophore corynebactin were shown to be coordinately regulated (3,7,31). This regulation is moderated by the activity of the iron-dependent diphtheria toxin repressor (DtxR), encoded by the chromosomal dtxR gene. The structural gene (tox) for diphtheria toxin is encoded on the genome of several temperate corynebacteriophages (24); however, the genes that determine siderophore production and the high-affinity iron uptake systems of C. diphtheriae are chromosomal (28).Transcription of tox in C. diphtheriae is repressed in cultures grown in high-iron medium and derepressed in cultures depleted of iron (18,22,32). The dtxR gene was cloned independently by Boyd et al. (3) and Schmitt and Holmes (31). The nucleotide sequence of dtxR has been determined elsewhere (3), and the deduced amino acid sequence exhibited very limited homology with the ferric uptake regulatory protein (Fur) of Escherichia coli (3, 31). The DtxR protein was purified (34,39), and footprinting experiments demonstrated that DtxR protected an approximately 30-bp sequence located upstream of the tox gene from digestion by DNase I (34,40). This tox operator sequence overlapped the -10 sequence of the tox promoter and contained a 9-bp inverted repeat. The binding of DtxR to the tox operator in vitro was dependent on the presence of Fe2" or any of several other divalent transition metals (33, 39).