Couples who are unable to conceive within a year of regular, unprotected sexual intercourse are recommended to seek evaluation. In about 40% of the couples, infertility is caused by a male factor and by both partners in an additional 20% of couples. The underlying causes for male infertility are multifactorial, with about 20% of these cases being idiopathic (Ayaz et al., 2015; Louis et al., 2013). 1.1 | Overview of semen analysis and its implications According to the guidelines of the World Health Organization (WHO, 2010), the clinical evaluation of male patients includes a medical history, physical examination and at least two semen analyses. The conventional semen analysis is very important in identifying the severity of male factor infertility and guiding future analysis and treatment (Agarwal & Bui, 2017). It further includes the determination of volume, pH, colour, viscosity, liquefaction time, number of round cells, sperm total count, concentration, motility and normal sperm morphology. 1.2 | Limitations of semen analysis in predicting fertility status Although standard semen analysis remains the standard of care to initially evaluate male patients with infertility, a routine semen analysis does not accurately identify the aetiology of infertility or predict the reproductive success (Snow-Lisy & Sabanegh, 2013). Routine semen analysis yields variable results due to inter-and intra-observer variability, and it gives no information about sperm dysfunctions at cellular and molecular levels (Agarwal & Bui, 2017; Esteves, 2014). Moreover, the lower reference limits established by the WHO are not applicable to all men as values of semen parameters overlap in fertile and infertile men. Therefore, the exact cause of idiopathic and unexplained male infertility remains unknown, even after performing routine semen analysis (Hamada, Esteves, & Agarwal, 2011; Wallach et al., 1983). Normal semen parameters do not equate with a normal fertilisation potential of spermatozoa (Hamada et al., 2011; Lewis, 2007). As a consequence, more advanced tests are needed to accurately diagnose male infertility and predict pregnancy in couples trying to conceive naturally or couples undergoing assisted reproductive technologies (ART; Oehninger, Franken, & Ombelet, 2014).