Secondary tropical forests and coffee agroforestry systems contain fewer trees than native forests but can positively impact soil hydrological functions, such as water infiltration compared to the pasture land that they replace. However, for both land uses it remains in how far the soil hydraulic characteristics are comparable to that of native forest. Therefore, we investigated the saturated hydraulic conductivity (Ks) and some hydrophysical soil attributes in four land-use types: (i) a shade-grown coffee; (ii) a natural regenerated forest 15 years ago; (iii) a pasture; and (iv) a reference forest, in the municipality of La Jagua de Ibirico, César department, Colombia. We determined historical land use and conducted soil sampling, using the Beerkan method to determine the Ks values. We also measured canopy cover, vegetation height, diameter at breast height and total number of trees in the forest covers. Our results indicate that Ks values were similar for the coffee and the reference forest, reflecting the positive effect of trees on soil hydrological functioning in agroforestry systems. Our results suggest that 15 years of forest regeneration after land abandonment in Sub-Andean Forest, can improve the soil hydraulic attributes. Additionally, soil water repellency was observed for the reference forest soil.